RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 NUP54Q7Z3B4 507 aa14.14□□□□□ -0.15
CUX1-214ENST00000550008 TECPR1Q7Z6L1 1165 aa14.14□□□□□ -0.15
CUX1-214ENST00000550008 GPER1Q99527 375 aa14.14□□□□□ -0.15
CUX1-214ENST00000550008 RPP25Q9BUL9 199 aaKnown RBP14.14□□□□□ -0.15
CUX1-214ENST00000550008 ALOXE3Q9BYJ1 711 aa14.14□□□□□ -0.15
CUX1-214ENST00000550008 SP140LQ9H930 580 aa14.14□□□□□ -0.15
CUX1-214ENST00000550008 SEC61A2Q9H9S3 476 aa14.14□□□□□ -0.15
CUX1-214ENST00000550008 RPRD1BQ9NQG5 326 aaKnown RBP14.14□□□□□ -0.15
CUX1-214ENST00000550008 NDUFAF4Q9P032 175 aa14.14□□□□□ -0.15
CUX1-214ENST00000550008 TRPM6Q9BX84 2022 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 EGFP01133 1207 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 SLC6A6P31641 620 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 CTHP32929 405 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 TIAL1Q01085 375 aaKnown RBP eCLIP14.13□□□□□ -0.15
CUX1-214ENST00000550008 C6orf183Q5T699 404 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 MEDAGQ5VYS4 303 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 ZNF765Q7L2R6 523 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 ZBTB8BQ8NAP8 495 aaPredicted RBP14.13□□□□□ -0.15
CUX1-214ENST00000550008 OR1E3Q8WZA6 343 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 OR7D2Q96RA2 312 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 MTHFD2LQ9H903 347 aaPredicted RBP14.13□□□□□ -0.15
CUX1-214ENST00000550008 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.13□□□□□ -0.15
CUX1-214ENST00000550008 KLRF1Q9NZS2 232 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 UNC119BA6NIH7 251 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 H0YGG7 62 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 LINC01565O15544 149 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 CDC40O60508 579 aaKnown RBP eCLIP14.13□□□□□ -0.15
CUX1-214ENST00000550008 DRD1P21728 446 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 ARF3P61204 181 aaPredicted RBP14.13□□□□□ -0.15
CUX1-214ENST00000550008 C1orf216Q8TAB5 229 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 DSN1Q9H410 356 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 EGLN3Q9H6Z9 239 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 HSPE1-MOB4S4R3N1 261 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 FAM172BPA6NC97 362 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 RENP00797 406 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 HOXA9P31269 272 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 BCL6P41182 706 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 STAT5AP42229 794 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 MAT1AQ00266 395 aaKnown RBP14.13□□□□□ -0.15
CUX1-214ENST00000550008 KEAP1Q14145 624 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 DGLUCYQ7Z3D6 616 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 TMEM179BQ7Z7N9 219 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 CDH24Q86UP0 819 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 OR52E2Q8NGJ4 325 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 FGF14Q92915 247 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 ACOT13Q9NPJ3 140 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 ING3Q9NXR8 418 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 ATXN7L1Q9ULK2 861 aaPredicted RBP14.13□□□□□ -0.15
CUX1-214ENST00000550008 KLHL18O94889 574 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 HK1P19367 917 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 MAZP56270 477 aaKnown RBP14.13□□□□□ -0.15
CUX1-214ENST00000550008 NRG3P56975 720 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 OC90Q02509 493 aaPredicted RBP14.13□□□□□ -0.15
CUX1-214ENST00000550008 NSDHLQ15738 373 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 NKG7Q16617 165 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 ANKK1Q8NFD2 765 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 METTL2AQ96IZ6 378 aaKnown RBP14.13□□□□□ -0.15
CUX1-214ENST00000550008 POLDIP3Q9BY77 421 aaKnown RBP14.13□□□□□ -0.15
CUX1-214ENST00000550008 TBC1D29Q9UFV1 150 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 MYOFQ9NZM1 2061 aa14.13□□□□□ -0.15
CUX1-214ENST00000550008 SPTBP11277 2137 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 CDC14CA4D256 554 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 TMPRSS11DO60235 418 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 LCMT2O60294 686 aaKnown RBP14.12□□□□□ -0.15
CUX1-214ENST00000550008 PSMA3P25788 255 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 AHRP35869 848 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 NFATC4Q14934 902 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 VWA5B2Q8N398 1253 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 MEIOBQ8N635 442 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 OR6N2Q8NGY6 317 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 GGHQ92820 318 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 GAL3ST3Q96A11 431 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 EFHD2Q96C19 240 aaPredicted RBP14.12□□□□□ -0.15
CUX1-214ENST00000550008 CNDP2Q96KP4 475 aaKnown RBP14.12□□□□□ -0.15
CUX1-214ENST00000550008 MS4A4EQ96PG1 132 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 TIMM29Q9BSF4 260 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 PLGP00747 810 aaPredicted RBP14.12□□□□□ -0.15
CUX1-214ENST00000550008 RABIFP47224 123 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 DNASE1L1P49184 302 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 LPAL2Q16609 132 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 METRNLQ641Q3 311 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 ACBD7Q8N6N7 88 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 SAMD12Q8N8I0 201 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 NECTIN4Q96NY8 510 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 TAAR2Q9P1P5 351 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 ENPP5Q9UJA9 477 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 SH2B3Q9UQQ2 575 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 ERVK-19Q9WJR5 959 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 SPTA1P02549 2419 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 GPNMBQ14956 572 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 OR2G6Q5TZ20 316 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 THOC7Q6I9Y2 204 aaKnown RBP14.12□□□□□ -0.15
CUX1-214ENST00000550008 FAM71E1Q6IPT2 247 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 FAM180AQ6UWF9 173 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 RBM12BQ8IXT5 1001 aaKnown RBP14.12□□□□□ -0.15
CUX1-214ENST00000550008 GAB3Q8WWW8 586 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 CKLFQ9UBR5 152 aa14.12□□□□□ -0.15
CUX1-214ENST00000550008 FAM25EA8MYX2 175 aa14.11□□□□□ -0.15
CUX1-214ENST00000550008 OXSR1O95747 527 aaPredicted RBP14.11□□□□□ -0.15
CUX1-214ENST00000550008 CSN2P05814 226 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms