RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 RENP00797 406 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 MELTFP08582 738 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 HOXD4P09016 255 aaPredicted RBP3.27□□□□□ -1.89
VPS29-205ENST00000548539 EPB41P11171 864 aaKnown RBP3.27□□□□□ -1.89
VPS29-205ENST00000548539 TNNI3P19429 210 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 DPP4P27487 766 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 PGFP49763 221 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 CSRP3P50461 194 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 PRELPP51888 382 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 NAPAP54920 295 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 ELP6Q0PNE2 266 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 RAB35Q15286 201 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 SLC1A5Q15758 541 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 UBE2V2Q15819 145 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 C17orf58Q2M2W7 97 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 MS4A13Q5J8X5 152 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 LINC00242Q5T6M2 205 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 RIPPLY2Q5TAB7 128 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 ASPHD2Q6ICH7 369 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 WASH2PQ6VEQ5 465 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 STOX1Q6ZVD7 989 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 TMUB2Q71RG4 321 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 SH2D6Q7Z4S9 175 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 VPS36Q86VN1 386 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 GRAMD2AQ8IUY3 354 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 PHC2Q8IXK0 858 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 CENPLQ8N0S6 344 aaPredicted RBP3.27□□□□□ -1.89
VPS29-205ENST00000548539 C17orf47Q8NEP4 570 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 OR6T1Q8NGN1 323 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 RFESDQ8TAC1 157 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 FLVCR1-AS1Q8TAF5 88 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 ITLN1Q8WWA0 313 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 ADIPOR1Q96A54 375 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 PINX1Q96BK5 328 aaKnown RBP3.27□□□□□ -1.89
VPS29-205ENST00000548539 DTNBP1Q96EV8 351 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 DNAJA3Q96EY1 480 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 ELMO2Q96JJ3 720 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 TESK2Q96S53 571 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 ATOH8Q96SQ7 321 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 TBCDQ9BTW9 1192 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 RPP25Q9BUL9 199 aaKnown RBP3.27□□□□□ -1.89
VPS29-205ENST00000548539 PNNQ9H307 717 aaKnown RBP3.27□□□□□ -1.89
VPS29-205ENST00000548539 CALHM2Q9HA72 323 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 CIDEBQ9UHD4 219 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 LAMP5Q9UJQ1 280 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 KLK13Q9UKR3 277 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 ATP6V0A2Q9Y487 856 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 KIF3AQ9Y496 699 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 A0A1W2PPR1 153 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 FBLL1A6NHQ2 334 aaKnown RBP3.26□□□□□ -1.89
VPS29-205ENST00000548539 CCT8L1PA6NM43 557 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 ZNF487B1APH4 448 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 NPIPA2E9PIF3 369 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 PDLIM1O00151 329 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 NDC80O14777 642 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 IGHV3-9P01782 118 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 KRT6BP04259 564 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 PCCBP05166 539 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 HOXB7P09629 217 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 THRBP10828 461 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 HSPA5P11021 654 aaKnown RBP3.26□□□□□ -1.89
VPS29-205ENST00000548539 IDSP22304 550 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 AXLP30530 894 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 KIF5BP33176 963 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 KRT6CP48668 564 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 ZFP36L1Q07352 338 aaKnown RBP3.26□□□□□ -1.89
VPS29-205ENST00000548539 COX10Q12887 443 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 ZIC1Q15915 447 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 CDKN3Q16667 212 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 TMEM41BQ5BJD5 291 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 VWA2Q5GFL6 755 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 SLC25A24Q6NUK1 477 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 NIPAL3Q6P499 406 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 LEG1Q6P5S2 330 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 CBWD2Q8IUF1 395 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 HSCBQ8IWL3 235 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 SLC22A18ASQ8N1D0 253 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 TBCKQ8TEA7 893 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 RASL10AQ92737 203 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 THRSPQ92748 146 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 UPRTQ96BW1 309 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 C11orf24Q96F05 449 aaPredicted RBP3.26□□□□□ -1.89
VPS29-205ENST00000548539 DHTKD1Q96HY7 919 aaPredicted RBP3.26□□□□□ -1.89
VPS29-205ENST00000548539 TBC1D10AQ9BXI6 508 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 WDR76Q9H967 626 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 GPN2Q9H9Y4 310 aaPredicted RBP3.26□□□□□ -1.89
VPS29-205ENST00000548539 AGPAT5Q9NUQ2 364 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 RBM28Q9NW13 759 aaKnown RBP3.26□□□□□ -1.89
VPS29-205ENST00000548539 UTP6Q9NYH9 597 aaKnown RBP3.26□□□□□ -1.89
VPS29-205ENST00000548539 DHRS4-AS1Q9P1J3 65 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 PRODH2Q9UF12 536 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 CHRNA9Q9UGM1 479 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 DHRS7Q9Y394 339 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 CUX2O14529 1486 aa3.26□□□□□ -1.89
VPS29-205ENST00000548539 TRAV9-2A0A087WT02 112 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 WASHC1A8K0Z3 465 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 MAPK13O15264 365 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 TYROBPO43914 113 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 CRLF1O75462 422 aa3.25□□□□□ -1.89
VPS29-205ENST00000548539 ANXA3P12429 323 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms