RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 NUDT14O95848 222 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 FGBP02675 491 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 HLA-DPB1P04440 258 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 CD3GP09693 182 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 ANXA3P12429 323 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 MYOGP15173 224 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 CRISP1P54107 249 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 DSTNP60981 165 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 SNRPD1P62314 119 aaKnown RBP5.17□□□□□ -1.58
LIMA1-203ENST00000547825 RPL11P62913 178 aaKnown RBP5.17□□□□□ -1.58
LIMA1-203ENST00000547825 DSC1Q08554 894 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 EIF2B5Q13144 721 aaKnown RBP5.17□□□□□ -1.58
LIMA1-203ENST00000547825 FGL2Q14314 439 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 PTGES3Q15185 160 aaKnown RBP5.17□□□□□ -1.58
LIMA1-203ENST00000547825 GPR19Q15760 415 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 KLHL22Q53GT1 634 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 CLLU1OSQ5K130 101 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 CAPN13Q6MZZ7 669 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-203ENST00000547825 OGFOD3Q6PK18 319 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 COMMD2Q86X83 199 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 KCNJ9Q92806 393 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 DNAJA3Q96EY1 480 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 MAP6Q96JE9 813 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 UBXN10Q96LJ8 280 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 CCDC115Q96NT0 180 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 SORBS1Q9BX66 1292 aaKnown RBP5.17□□□□□ -1.58
LIMA1-203ENST00000547825 BTBD2Q9BX70 525 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 HOXD1Q9GZZ0 328 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 SLITRK2Q9H156 845 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 MAGEH1Q9H213 219 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 KCNK12Q9HB15 430 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 LUZP4Q9P127 313 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 TNFRSF10DQ9UBN6 386 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 ASB1Q9Y576 335 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 FAM90A27PA6NNH2 459 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 GRXCR1A8MXD5 290 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 ATP6V1G2-DDX39BF2Z307 99 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 FABP7O15540 132 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 PAPSS2O95340 614 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-203ENST00000547825 LRG1P02750 347 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 URODP06132 367 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 SRPRAP08240 638 aaKnown RBP5.17□□□□□ -1.58
LIMA1-203ENST00000547825 EBLN1P0CF75 366 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 ADORA3P0DMS8 318 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 NSG1P42857 185 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 RPL34P49207 117 aaKnown RBP5.17□□□□□ -1.58
LIMA1-203ENST00000547825 MTNR1BP49286 362 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 SNTB2Q13425 540 aaKnown RBP5.17□□□□□ -1.58
LIMA1-203ENST00000547825 STK11Q15831 433 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 LAIR1Q6GTX8 287 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 TMEM220Q6QAJ8 160 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 TMIGD1Q6UXZ0 262 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 FOXRED2Q8IWF2 684 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 ARHGAP12Q8IWW6 846 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 TTC9BQ8N6N2 239 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 ARL14EPQ8N8R7 260 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-203ENST00000547825 ZNF548Q8NEK5 533 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-203ENST00000547825 BBS10Q8TAM1 723 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 RFT1Q96AA3 541 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 AP2M1Q96CW1 435 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 TRMT2BQ96GJ1 504 aaKnown RBP5.17□□□□□ -1.58
LIMA1-203ENST00000547825 TXNDC15Q96J42 360 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 CDX2Q99626 313 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-203ENST00000547825 LRFN3Q9BTN0 628 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 OR10A4Q9H209 315 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 ANKHQ9HCJ1 492 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 TREX1Q9NSU2 369 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 ZNF282Q9UDV7 671 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-203ENST00000547825 UBQLN2Q9UHD9 624 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 CLEC2DQ9UHP7 191 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 DUSP13Q9UII6 198 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 SRPK3Q9UPE1 567 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 PLCL2Q9UPR0 1127 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 STON1Q9Y6Q2 735 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 SCN8AQ9UQD0 1980 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 PIKFYVEQ9Y2I7 2098 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 TEX13CA0A0J9YWL9 993 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 ZNF879B4DU55 563 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 H3BNC9 293 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 ANKRD28O15084 1053 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 HOXC11O43248 304 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-203ENST00000547825 FRS3O43559 492 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 JRKO75564 520 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 RB1P06400 928 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 GJA1P17302 382 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 VIPR1P32241 457 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 MNDAP41218 407 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 GPR1P46091 355 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 BDKRB1P46663 353 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 CAPZA2P47755 286 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 MC1RQ01726 317 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 GALNT1Q10472 559 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-203ENST00000547825 FAPQ12884 760 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 SEMA3BQ13214 749 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 SNTA1Q13424 505 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 LASP1Q14847 261 aaKnown RBP5.17□□□□□ -1.58
LIMA1-203ENST00000547825 CTF1Q16619 201 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 GAB4Q2WGN9 574 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 NDUFAF5Q5TEU4 345 aa5.17□□□□□ -1.58
LIMA1-203ENST00000547825 XAF1Q6GPH4 301 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms