RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 GGTA1PQ4G0N0 100 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 NKAIN1Q4KMZ8 207 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 SGO1Q5FBB7 561 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 ARHGAP40Q5TG30 622 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 GKAP1Q5VSY0 366 aaPredicted RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 MLIPQ5VWP3 458 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 FRG2Q64ET8 278 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 PLAG1Q6DJT9 500 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 KRT80Q6KB66 452 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 NIPAL1Q6NVV3 410 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 TMEM154Q6P9G4 183 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 FAM199XQ6PEV8 388 aaPredicted RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 KCTD20Q7Z5Y7 419 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 SYVN1Q86TM6 617 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 SRFBP1Q8NEF9 429 aaKnown RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 HUS1BQ8NHY5 278 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 SETD6Q8TBK2 473 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 CT55Q8WUE5 264 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 SPSB4Q96A44 273 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 CMTM7Q96FZ5 175 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 C10orf90Q96M02 699 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 RAB3IPQ96QF0 476 aaPredicted RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 FRG2BQ96QU4 278 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 MTERF1Q99551 399 aaKnown RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 CENPKQ9BS16 269 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 TRMOQ9BU70 441 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 CACNG6Q9BXT2 260 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 SLC29A3Q9BZD2 475 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 SHCBP1LQ9BZQ2 653 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 GPN2Q9H9Y4 310 aaPredicted RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 ZNF304Q9HCX3 659 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 TNFRSF12AQ9NP84 129 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 SLC35D1Q9NTN3 355 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 GIMAP4Q9NUV9 329 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 ZNF446Q9NWS9 450 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 CNIH4Q9P003 139 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 TRPS1Q9UHF7 1281 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 CROTQ9UKG9 612 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 ADAM18Q9Y3Q7 739 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 TSC22D4Q9Y3Q8 395 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 SLC22A7Q9Y694 548 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 CLCA3PQ9Y6N3 262 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 SMG1Q96Q15 3661 aaKnown RBP4.78□□□□□ -1.64
CLIP1-217ENST00000543205 ADAMTS20P59510 1910 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 LOC101059948A0A1B0GTJ6 334 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 A0A1B0GTL3 188 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 LRIT2A6NDA9 550 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 MAGEB17A8MXT2 336 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 C21orf140B9A014 251 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 H0YIG0 161 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 SGK494L7N484 410 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 FOXE1O00358 373 aaPredicted RBP4.78□□□□□ -1.64
CLIP1-217ENST00000543205 MANBAO00462 879 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 UBFD1O14562 309 aaKnown RBP4.78□□□□□ -1.64
CLIP1-217ENST00000543205 TSPAN4O14817 238 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 ERI3O43414 337 aaKnown RBP4.78□□□□□ -1.64
CLIP1-217ENST00000543205 ATP8B1O43520 1251 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 FOXS1O43638 330 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 SH3BGRLO75368 114 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 KLHL18O94889 574 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 NSA2O95478 260 aaKnown RBP4.78□□□□□ -1.64
CLIP1-217ENST00000543205 SERPINE1P05121 402 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 CD1AP06126 327 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 CAPN1P07384 714 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 IL1RNP18510 177 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 FBLP22087 321 aaKnown RBP4.78□□□□□ -1.64
CLIP1-217ENST00000543205 ACVR2AP27037 513 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 SERPINB5P36952 375 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 ZNF81P51508 661 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 RAP1GDS1P52306 607 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 PLA2G16P53816 162 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 RAB8AP61006 207 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 RPS13P62277 151 aaKnown RBP4.78□□□□□ -1.64
CLIP1-217ENST00000543205 BTN3A2P78410 334 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 OCA2Q04671 838 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 DNASE1L3Q13609 305 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 CHI3L2Q15782 390 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 DEFB134Q4QY38 66 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 TMEM35AQ53FP2 167 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 DGAT2L7PQ6IED9 249 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 ADNP2Q6IQ32 1131 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 LCN10Q6JVE6 187 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 TRIM40Q6P9F5 258 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 LINC00696Q6ZRV3 163 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 ZCCHC23Q6ZST2 131 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 CUZD1Q86UP6 607 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 VASH2Q86V25 355 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 PROSER1Q86XN7 944 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 OR2L5Q8NG80 312 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 OR9A4Q8NGU2 314 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 WDR20Q8TBZ3 569 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 AGAP11Q8TF27 550 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 ZNF473Q8WTR7 871 aaKnown RBP4.78□□□□□ -1.64
CLIP1-217ENST00000543205 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.78□□□□□ -1.64
CLIP1-217ENST00000543205 SELENOMQ8WWX9 145 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 CORO2AQ92828 525 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 TUBGCP3Q96CW5 907 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 MS4A6EQ96DS6 147 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 F2RL3Q96RI0 385 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 CCNL2Q96S94 520 aaPredicted RBP4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms