RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 LYPD8Q6UX82 237 aa11.23□□□□□ -0.61
DDX55-210ENST00000543016 NPSR1Q6W5P4 371 aa11.23□□□□□ -0.61
DDX55-210ENST00000543016 HACD2Q6Y1H2 254 aa11.23□□□□□ -0.61
DDX55-210ENST00000543016 Q6ZS92 163 aa11.23□□□□□ -0.61
DDX55-210ENST00000543016 ARPINQ7Z6K5 226 aa11.23□□□□□ -0.61
DDX55-210ENST00000543016 RETREG3Q86VR2 466 aa11.23□□□□□ -0.61
DDX55-210ENST00000543016 RNF130Q86XS8 419 aa11.23□□□□□ -0.61
DDX55-210ENST00000543016 CYP4Z2PQ8N1L4 340 aa11.23□□□□□ -0.61
DDX55-210ENST00000543016 METTL25Q8N6Q8 603 aa11.23□□□□□ -0.61
DDX55-210ENST00000543016 EXD3Q8N9H8 876 aa11.23□□□□□ -0.61
DDX55-210ENST00000543016 TMEM178AQ8NBL3 297 aa11.23□□□□□ -0.61
DDX55-210ENST00000543016 FAM110BQ8TC76 370 aa11.23□□□□□ -0.61
DDX55-210ENST00000543016 DIO2Q92813 273 aa11.23□□□□□ -0.61
DDX55-210ENST00000543016 PMM1Q92871 262 aa11.23□□□□□ -0.61
DDX55-210ENST00000543016 TMCO6Q96DC7 493 aa11.23□□□□□ -0.61
DDX55-210ENST00000543016 OMA1Q96E52 524 aa11.23□□□□□ -0.61
DDX55-210ENST00000543016 C16orf58Q96GQ5 468 aa11.23□□□□□ -0.61
DDX55-210ENST00000543016 C5orf34Q96MH7 638 aa11.23□□□□□ -0.61
DDX55-210ENST00000543016 ANKRD27Q96NW4 1050 aa11.23□□□□□ -0.61
DDX55-210ENST00000543016 COL21A1Q96P44 957 aa11.23□□□□□ -0.61
DDX55-210ENST00000543016 OR7D2Q96RA2 312 aa11.23□□□□□ -0.61
DDX55-210ENST00000543016 CGREF1Q99674 301 aa11.23□□□□□ -0.61
DDX55-210ENST00000543016 HOPXQ9BPY8 73 aaPredicted RBP11.23□□□□□ -0.61
DDX55-210ENST00000543016 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.23□□□□□ -0.61
DDX55-210ENST00000543016 LIN28AQ9H9Z2 209 aaKnown RBP11.23□□□□□ -0.61
DDX55-210ENST00000543016 POLE3Q9NRF9 147 aa11.23□□□□□ -0.61
DDX55-210ENST00000543016 MAP10Q9P2G4 905 aa11.23□□□□□ -0.61
DDX55-210ENST00000543016 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.23□□□□□ -0.61
DDX55-210ENST00000543016 ANKRD33BA6NCL7 494 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 TMEM247A6NEH6 219 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 MAN1A2O60476 641 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 TSPAN2O60636 221 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 REM1O75628 298 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 NEURL1O76050 574 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 OR6B1O95007 311 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 BMP2P12643 396 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 GPX2P18283 190 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 IL12BP29460 328 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 SNTA1Q13424 505 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 ART3Q13508 389 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 INAQ16352 499 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 RUNDC3AQ59EK9 446 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 SLC22A10Q63ZE4 541 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 SLC25A25Q6KCM7 469 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 HEPHL1Q6MZM0 1159 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 RPUSD3Q6P087 351 aaKnown RBP11.22□□□□□ -0.61
DDX55-210ENST00000543016 ANGPTL8Q6UXH0 198 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 IL20RBQ6UXL0 311 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 DNAJC14Q6Y2X3 702 aaPredicted RBP11.22□□□□□ -0.61
DDX55-210ENST00000543016 C16orf47Q6ZP98 133 aaPredicted RBP11.22□□□□□ -0.61
DDX55-210ENST00000543016 ZFHX4Q86UP3 3567 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 TREML1Q86YW5 311 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 AMER2Q8N7J2 671 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 BCORP1Q8N888 145 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 MDS2Q8NDY4 140 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 CHDHQ8NE62 594 aaPredicted RBP11.22□□□□□ -0.61
DDX55-210ENST00000543016 OR8J3Q8NGG0 315 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 PAQR8Q8TEZ7 354 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 TMBIM1Q969X1 311 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 PNPLA2Q96AD5 504 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 LRRC58Q96CX6 371 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 HOXD1Q9GZZ0 328 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 OR51I1Q9H343 314 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 ZBTB20Q9HC78 741 aaPredicted RBP11.22□□□□□ -0.61
DDX55-210ENST00000543016 NDE1Q9NXR1 346 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 SLC25A37Q9NYZ2 338 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 PLA2G3Q9NZ20 509 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 CALML5Q9NZT1 146 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 VAPAQ9P0L0 249 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 TAGLN3Q9UI15 199 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 B3GNT3Q9Y2A9 372 aa11.22□□□□□ -0.61
DDX55-210ENST00000543016 KLF13Q9Y2Y9 288 aaPredicted RBP11.22□□□□□ -0.61
DDX55-210ENST00000543016 KLRC4-KLRK1H3BQV0 150 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 ZNF354AO60765 605 aaPredicted RBP11.21□□□□□ -0.61
DDX55-210ENST00000543016 SLC25A12O75746 678 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 KCNK2O95069 426 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 UNC5CO95185 931 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 SNX4O95219 450 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 PDGFAP04085 211 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 P04436 131 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 SP1P08047 785 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 NGFRP08138 427 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 CD1EP15812 388 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 ENDOUP21128 410 aaKnown RBP11.21□□□□□ -0.61
DDX55-210ENST00000543016 ATP6V1C1P21283 382 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 CLK3P49761 638 aaKnown RBP11.21□□□□□ -0.61
DDX55-210ENST00000543016 KLRB1Q12918 225 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 ZNF169Q14929 603 aaPredicted RBP11.21□□□□□ -0.61
DDX55-210ENST00000543016 RGNQ15493 299 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 NNATQ16517 81 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 ARHGAP11BQ3KRB8 267 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 ZNF468Q5VIY5 522 aaPredicted RBP11.21□□□□□ -0.61
DDX55-210ENST00000543016 PRAMEF8Q5VWM4 474 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 PRAMEF7Q5VXH5 474 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 TRPM8Q7Z2W7 1104 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 C16orf62Q7Z3J2 963 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 MSRB3Q8IXL7 192 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 CLEC4FQ8N1N0 589 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 FITM2Q8N6M3 262 aa11.21□□□□□ -0.61
DDX55-210ENST00000543016 RBMXL3Q8N7X1 1067 aaKnown RBP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms