RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 ZNF540Q8NDQ6 660 aa4.33□□□□□ -1.72
PRKDC-208ENST00000536710 CRYGNQ8WXF5 182 aa4.33□□□□□ -1.72
PRKDC-208ENST00000536710 RAB7BQ96AH8 199 aa4.33□□□□□ -1.72
PRKDC-208ENST00000536710 UPRTQ96BW1 309 aa4.33□□□□□ -1.72
PRKDC-208ENST00000536710 DNAJA3Q96EY1 480 aa4.33□□□□□ -1.72
PRKDC-208ENST00000536710 PSMB7Q99436 277 aa4.33□□□□□ -1.72
PRKDC-208ENST00000536710 GPA33Q99795 319 aa4.33□□□□□ -1.72
PRKDC-208ENST00000536710 SOSTQ9BQB4 213 aa4.33□□□□□ -1.72
PRKDC-208ENST00000536710 TTYH2Q9BSA4 534 aa4.33□□□□□ -1.72
PRKDC-208ENST00000536710 TBC1D10AQ9BXI6 508 aa4.33□□□□□ -1.72
PRKDC-208ENST00000536710 MRPL13Q9BYD1 178 aaKnown RBP4.33□□□□□ -1.72
PRKDC-208ENST00000536710 NFKBIZQ9BYH8 718 aa4.33□□□□□ -1.72
PRKDC-208ENST00000536710 TRIM9Q9C026 710 aa4.33□□□□□ -1.72
PRKDC-208ENST00000536710 MLXQ9UH92 298 aa4.33□□□□□ -1.72
PRKDC-208ENST00000536710 RNF115Q9Y4L5 304 aa4.33□□□□□ -1.72
PRKDC-208ENST00000536710 AP4B1Q9Y6B7 739 aa4.33□□□□□ -1.72
PRKDC-208ENST00000536710 A0A1B0GWJ7 208 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 ACOD1A6NK06 481 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 ZNF487B1APH4 448 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 PI15O43692 258 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 TYROBPO43914 113 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 JAK2O60674 1132 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 GALR3O60755 368 aaPredicted RBP4.32□□□□□ -1.72
PRKDC-208ENST00000536710 MFN2O95140 757 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 IGHV3-13P01766 116 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 IGHG3P01860 377 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 ASNSP08243 561 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 SNRPCP09234 159 aaKnown RBP4.32□□□□□ -1.72
PRKDC-208ENST00000536710 SOX6P35712 828 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 POU3F4P49335 361 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 ZNF33BQ06732 778 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 FCN2Q15485 313 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 ZIC1Q15915 447 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 CDKN3Q16667 212 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 SNAI3Q3KNW1 292 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 DCAF4L1Q3SXM0 396 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 MS4A13Q5J8X5 152 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 NHLRC3Q5JS37 347 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 LINC00242Q5T6M2 205 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 SEL1L3Q68CR1 1132 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 SCYL2Q6P3W7 929 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 BTNL3Q6UXE8 466 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 SLC47A2Q86VL8 602 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 ERICH1Q86X53 443 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 KRTAP7-1Q8IUC3 87 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 TBCKQ8TEA7 893 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 RASL10AQ92737 203 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 NTNG2Q96CW9 530 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 DHTKD1Q96HY7 919 aaPredicted RBP4.32□□□□□ -1.72
PRKDC-208ENST00000536710 GFRA4Q9GZZ7 299 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 AGPAT5Q9NUQ2 364 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 RAI14Q9P0K7 980 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 SNX6Q9UNH7 406 aa4.32□□□□□ -1.72
PRKDC-208ENST00000536710 CCDC7Q96M83 1385 aa4.31□□□□□ -1.72
PRKDC-208ENST00000536710 ZSCAN5CA6NGD5 496 aaPredicted RBP4.31□□□□□ -1.72
PRKDC-208ENST00000536710 E2F3O00716 465 aa4.31□□□□□ -1.72
PRKDC-208ENST00000536710 PPIHO43447 177 aaKnown RBP4.31□□□□□ -1.72
PRKDC-208ENST00000536710 SERPINB2P05120 415 aa4.31□□□□□ -1.72
PRKDC-208ENST00000536710 IGFBP1P08833 259 aaPredicted RBP4.31□□□□□ -1.72
PRKDC-208ENST00000536710 WNT2P09544 360 aa4.31□□□□□ -1.72
PRKDC-208ENST00000536710 ANXA3P12429 323 aa4.31□□□□□ -1.72
PRKDC-208ENST00000536710 ATP6V1C1P21283 382 aa4.31□□□□□ -1.72
PRKDC-208ENST00000536710 PSMA5P28066 241 aa4.31□□□□□ -1.72
PRKDC-208ENST00000536710 PRPHP41219 470 aa4.31□□□□□ -1.72
PRKDC-208ENST00000536710 IFNAR2P48551 515 aa4.31□□□□□ -1.72
PRKDC-208ENST00000536710 NCR3LG1Q68D85 454 aa4.31□□□□□ -1.72
PRKDC-208ENST00000536710 ZNF772Q68DY9 489 aaPredicted RBP4.31□□□□□ -1.72
PRKDC-208ENST00000536710 BLOC1S2Q6QNY1 142 aa4.31□□□□□ -1.72
PRKDC-208ENST00000536710 CBLN3Q6UW01 205 aa4.31□□□□□ -1.72
PRKDC-208ENST00000536710 SLC22A18ASQ8N1D0 253 aa4.31□□□□□ -1.72
PRKDC-208ENST00000536710 ADIPOR1Q96A54 375 aa4.31□□□□□ -1.72
PRKDC-208ENST00000536710 RPP25Q9BUL9 199 aaKnown RBP4.31□□□□□ -1.72
PRKDC-208ENST00000536710 DHX33Q9H6R0 707 aaKnown RBP4.31□□□□□ -1.72
PRKDC-208ENST00000536710 GNB4Q9HAV0 340 aa4.31□□□□□ -1.72
PRKDC-208ENST00000536710 AMBNQ9NP70 447 aa4.31□□□□□ -1.72
PRKDC-208ENST00000536710 UTP6Q9NYH9 597 aaKnown RBP4.31□□□□□ -1.72
PRKDC-208ENST00000536710 ARMCX1Q9P291 453 aa4.31□□□□□ -1.72
PRKDC-208ENST00000536710 B9D1Q9UPM9 204 aa4.31□□□□□ -1.72
PRKDC-208ENST00000536710 EXOSC1Q9Y3B2 195 aaKnown RBP4.31□□□□□ -1.72
PRKDC-208ENST00000536710 KIF26BQ2KJY2 2108 aa4.3□□□□□ -1.72
PRKDC-208ENST00000536710 GRIN2DO15399 1336 aa4.3□□□□□ -1.72
PRKDC-208ENST00000536710 SF3B1O75533 1304 aaKnown RBP eCLIP4.3□□□□□ -1.72
PRKDC-208ENST00000536710 TRBV7-9A0A0J9YWB2 115 aa4.3□□□□□ -1.72
PRKDC-208ENST00000536710 A8MUI8 341 aa4.3□□□□□ -1.72
PRKDC-208ENST00000536710 ANGPT2O15123 496 aa4.3□□□□□ -1.72
PRKDC-208ENST00000536710 SH3BGRLO75368 114 aa4.3□□□□□ -1.72
PRKDC-208ENST00000536710 RENP00797 406 aa4.3□□□□□ -1.72
PRKDC-208ENST00000536710 HOXD4P09016 255 aaPredicted RBP4.3□□□□□ -1.72
PRKDC-208ENST00000536710 PVRP15151 417 aa4.3□□□□□ -1.72
PRKDC-208ENST00000536710 CAPN2P17655 700 aa4.3□□□□□ -1.72
PRKDC-208ENST00000536710 HTR2AP28223 471 aa4.3□□□□□ -1.72
PRKDC-208ENST00000536710 METAP1P53582 386 aa4.3□□□□□ -1.72
PRKDC-208ENST00000536710 SNTB2Q13425 540 aaKnown RBP4.3□□□□□ -1.72
PRKDC-208ENST00000536710 SLC10A1Q14973 349 aa4.3□□□□□ -1.72
PRKDC-208ENST00000536710 MAPK6Q16659 721 aa4.3□□□□□ -1.72
PRKDC-208ENST00000536710 C17orf58Q2M2W7 97 aa4.3□□□□□ -1.72
PRKDC-208ENST00000536710 ANKDD1AQ495B1 522 aa4.3□□□□□ -1.72
PRKDC-208ENST00000536710 SLC36A3Q495N2 470 aa4.3□□□□□ -1.72
PRKDC-208ENST00000536710 GSG1LQ6UXU4 331 aa4.3□□□□□ -1.72
PRKDC-208ENST00000536710 CEACAM19Q7Z692 300 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms