RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 OARD1Q9Y530 152 aa6.21□□□□□ -1.42
USP28-202ENST00000535607 LINC00854A0A1B0GVQ3 168 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 ZNF785A8K8V0 405 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 PATE3B3GLJ2 98 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 NPIPB8E9PQR5 432 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 OR7A17O14581 309 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 SLC9A3R1O14745 358 aaPredicted RBP6.2□□□□□ -1.42
USP28-202ENST00000535607 TSPAN4O14817 238 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 PPEF2O14830 753 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 FFAR2O15552 330 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 CHST10O43529 356 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 RAMP2O60895 175 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 AP2A2O94973 939 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 CDRT1O95170 752 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 VIPP01282 170 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 CSF3P09919 207 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 ATXN1LP0C7T5 689 aaKnown RBP6.2□□□□□ -1.42
USP28-202ENST00000535607 CBSLP0DN79 551 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 IFI30P13284 250 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 ZNF7P17097 686 aaPredicted RBP6.2□□□□□ -1.42
USP28-202ENST00000535607 ENGP17813 658 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 RPL17P18621 184 aaKnown RBP6.2□□□□□ -1.42
USP28-202ENST00000535607 AZGP1P25311 298 aaKnown RBP6.2□□□□□ -1.42
USP28-202ENST00000535607 PSMA3P25788 255 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 PCGF2P35227 344 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 CBSP35520 551 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 PPM1AP35813 382 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 RPL3P39023 403 aaKnown RBP6.2□□□□□ -1.42
USP28-202ENST00000535607 BRCC3P46736 316 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 SELENOPP49908 381 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 AGTR2P50052 363 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 BLVRAP53004 296 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 SELENOWP63302 87 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 CYP4F2P78329 520 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 SPIBQ01892 262 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 PPP1R8Q12972 351 aaKnown RBP6.2□□□□□ -1.42
USP28-202ENST00000535607 SNTA1Q13424 505 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 PTGR1Q14914 329 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 VEPH1Q14D04 833 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 BAK1Q16611 211 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 TMEM44Q2T9K0 475 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 ZNF284Q2VY69 593 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 FAM171A1Q5VUB5 890 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 ZNF57Q68EA5 555 aaPredicted RBP6.2□□□□□ -1.42
USP28-202ENST00000535607 PTRHD1Q6GMV3 140 aaKnown RBP6.2□□□□□ -1.42
USP28-202ENST00000535607 ZNF585AQ6P3V2 769 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 ZNF783Q6ZMS7 281 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 ZNF621Q6ZSS3 439 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 LAX1Q8IWV1 398 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 MSRB3Q8IXL7 192 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 TAGAPQ8N103 731 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 Q8N402 240 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 C9orf62Q8N4C0 152 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 ZNF808Q8N4W9 903 aaPredicted RBP6.2□□□□□ -1.42
USP28-202ENST00000535607 DCBLD1Q8N8Z6 715 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 SRFBP1Q8NEF9 429 aaKnown RBP6.2□□□□□ -1.42
USP28-202ENST00000535607 ZNF680Q8NEM1 530 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 OR52B6Q8NGF0 335 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 TMEM163Q8TC26 289 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 Q8TCH9 128 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 EEF1AKMT1Q8WVE0 214 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 PIH1D2Q8WWB5 315 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 GEMIN6Q8WXD5 167 aaKnown RBP6.2□□□□□ -1.42
USP28-202ENST00000535607 HERVK_113Q902F9 699 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 BADQ92934 168 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 CXorf40BQ96DE9 158 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 NXPE2Q96DL1 559 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 MSANTD3Q96H12 275 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 CASD1Q96PB1 797 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 TEFMQ96QE5 360 aaKnown RBP6.2□□□□□ -1.42
USP28-202ENST00000535607 OR2M2Q96R28 347 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 FEVQ99581 238 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 MNTQ99583 582 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 SMOQ99835 787 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 SEMA3CQ99985 751 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 C19orf43Q9BQ61 176 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 C7orf50Q9BRJ6 194 aaKnown RBP6.2□□□□□ -1.42
USP28-202ENST00000535607 UQCC2Q9BRT2 126 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 CCM2Q9BSQ5 444 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 POLR2J2Q9GZM3 115 aaKnown RBP6.2□□□□□ -1.42
USP28-202ENST00000535607 ACTR6Q9GZN1 396 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 ZMAT3Q9HA38 289 aaKnown RBP6.2□□□□□ -1.42
USP28-202ENST00000535607 RDH14Q9HBH5 336 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 ABCB9Q9NP78 766 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.2□□□□□ -1.42
USP28-202ENST00000535607 AURKAIP1Q9NWT8 199 aaPredicted RBP6.2□□□□□ -1.42
USP28-202ENST00000535607 LYARQ9NX58 379 aaKnown RBP6.2□□□□□ -1.42
USP28-202ENST00000535607 TRPM5Q9NZQ8 1165 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 ZNF282Q9UDV7 671 aaPredicted RBP6.2□□□□□ -1.42
USP28-202ENST00000535607 MUTYHQ9UIF7 546 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 BAIAP2Q9UQB8 552 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 DHRS7Q9Y394 339 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 NME7Q9Y5B8 376 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 TET1Q8NFU7 2136 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 NUP205Q92621 2012 aa6.2□□□□□ -1.42
USP28-202ENST00000535607 A0A0X1KG70 313 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 A0A1W2PQ67 120 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 PIPSLA2A3N6 862 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 OR51F1A6NGY5 319 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 FAM25EA8MYX2 175 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms