RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 ACTN3Q08043 901 aaPredicted RBP3.34□□□□□ -1.87
CD44-235ENST00000532339 ALX1Q15699 326 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 CHRNA6Q15825 494 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 C2orf76Q3KRA6 126 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 KBTBD12Q3ZCT8 623 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 IQCCQ4KMZ1 466 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 SLC39A12Q504Y0 691 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 XKR4Q5GH76 650 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 CYB5D1Q6P9G0 228 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 CORO6Q6QEF8 472 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 TMEM270Q6UE05 265 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 BTNL8Q6UX41 500 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 TMEM139Q8IV31 216 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 SGMS2Q8NHU3 365 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 GRHL3Q8TE85 626 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 ZNF473Q8WTR7 871 aaKnown RBP3.34□□□□□ -1.87
CD44-235ENST00000532339 PDLIM5Q96HC4 596 aaKnown RBP3.34□□□□□ -1.87
CD44-235ENST00000532339 LINC00479Q96M42 142 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 PYGO2Q9BRQ0 406 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 DDA1Q9BW61 102 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 PRRG4Q9BZD6 226 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 DHX33Q9H6R0 707 aaKnown RBP3.34□□□□□ -1.87
CD44-235ENST00000532339 A4GALTQ9NPC4 353 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 ZDHHC18Q9NUE0 388 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 TXNDC16Q9P2K2 825 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 RCOR3Q9P2K3 495 aaPredicted RBP3.34□□□□□ -1.87
CD44-235ENST00000532339 PILRAQ9UKJ1 303 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 SCML1Q9UN30 329 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 CPQQ9Y646 472 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 CSNK1G3Q9Y6M4 447 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 AKAP6Q13023 2319 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 PTPRJQ12913 1337 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 CHD3Q12873 2000 aaKnown RBP3.33□□□□□ -1.88
CD44-235ENST00000532339 A0A1W2PRV1 198 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 NEDD8-MDP1E9PL57 170 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 E2F3O00716 465 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 MSH4O15457 936 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 NME6O75414 186 aaPredicted RBP3.33□□□□□ -1.88
CD44-235ENST00000532339 MT-ND3P03897 115 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 RPLP0P05388 317 aaKnown RBP3.33□□□□□ -1.88
CD44-235ENST00000532339 CISD3P0C7P0 127 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 CCL4P13236 92 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 CASP3P42574 277 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 CDX1P47902 265 aaPredicted RBP3.33□□□□□ -1.88
CD44-235ENST00000532339 CLK1P49759 484 aaKnown RBP3.33□□□□□ -1.88
CD44-235ENST00000532339 KHKP50053 298 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 VAMP7P51809 220 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 STX1BP61266 288 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 KIAA1644Q3SXP7 199 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 CASC4Q6P4E1 433 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 KCTD9Q7L273 389 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 KCNMB4Q86W47 210 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 CREBRFQ8IUR6 639 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 SIAH3Q8IW03 269 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 CCDC83Q8IWF9 413 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 C4orf19Q8IY42 314 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 CLYBLQ8N0X4 340 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 RYBPQ8N488 228 aaPredicted RBP3.33□□□□□ -1.88
CD44-235ENST00000532339 AMER3Q8N944 861 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 CCDC112Q8NEF3 446 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 DDHD1Q8NEL9 900 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 OR2T12Q8NG77 320 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 OR4K1Q8NGD4 311 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 OR10Q1Q8NGQ4 319 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 OR10T2Q8NGX3 314 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 PIBF1Q8WXW3 757 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 SLC47A1Q96FL8 570 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 THOC1Q96FV9 657 aaKnown RBP3.33□□□□□ -1.88
CD44-235ENST00000532339 SENP5Q96HI0 755 aaPredicted RBP3.33□□□□□ -1.88
CD44-235ENST00000532339 CCDC43Q96MW1 224 aaKnown RBP3.33□□□□□ -1.88
CD44-235ENST00000532339 TMEM121Q9BTD3 319 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 TRAF4Q9BUZ4 470 aaPredicted RBP3.33□□□□□ -1.88
CD44-235ENST00000532339 ACAT2Q9BWD1 397 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 BBS2Q9BXC9 721 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 UBXN6Q9BZV1 441 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 SRD5A3Q9H8P0 318 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 FGF22Q9HCT0 170 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 MID1IP1Q9NPA3 183 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 GSN-AS1Q9NRJ2 163 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 SPHK1Q9NYA1 384 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 SLCO1C1Q9NYB5 712 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 PTTG2Q9NZH5 202 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 VPS18Q9P253 973 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 ZANQ9Y493 2812 aa3.33□□□□□ -1.88
CD44-235ENST00000532339 MYOFQ9NZM1 2061 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 CNTRLQ7Z7A1 2325 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 A0A1W2PN81 502 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 NDUFAF8A1L188 74 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 SMIM30A4D0T7 59 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 SDR42E2A6NKP2 422 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 PRAMEF26H0Y7S4 382 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 ARPC2O15144 300 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 ZNF821O75541 412 aaPredicted RBP3.32□□□□□ -1.88
CD44-235ENST00000532339 C9P02748 559 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 ANKRD34CP0C6C1 535 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 KCNE1P15382 129 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 CHRNA7P36544 502 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 NKX2-1P43699 371 aaPredicted RBP3.32□□□□□ -1.88
CD44-235ENST00000532339 CCL7P80098 99 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 MYL7Q01449 175 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms