RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 PPP4R1LQ9P1A2 415 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 PSMC3IPQ9P2W1 217 aaPredicted RBP13.39□□□□□ -0.27
VPS28-215ENST00000531924 DCDC2Q9UHG0 476 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 RPH3AQ9Y2J0 694 aaPredicted RBP13.39□□□□□ -0.27
VPS28-215ENST00000531924 ANKHD1Q8IWZ3 2542 aaKnown RBP13.39□□□□□ -0.27
VPS28-215ENST00000531924 NCKAP5O14513 1909 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 FAM221AA4D161 298 aa13.38□□□□□ -0.27
VPS28-215ENST00000531924 KIF2AO00139 706 aaPredicted RBP13.38□□□□□ -0.27
VPS28-215ENST00000531924 PLOD3O60568 738 aa13.38□□□□□ -0.27
VPS28-215ENST00000531924 NME6O75414 186 aaPredicted RBP13.38□□□□□ -0.27
VPS28-215ENST00000531924 RCBTB2O95199 551 aa13.38□□□□□ -0.27
VPS28-215ENST00000531924 MYL2P10916 166 aa13.38□□□□□ -0.27
VPS28-215ENST00000531924 PYGBP11216 843 aa13.38□□□□□ -0.27
VPS28-215ENST00000531924 CHMP24386 653 aa13.38□□□□□ -0.27
VPS28-215ENST00000531924 DPP4P27487 766 aa13.38□□□□□ -0.27
VPS28-215ENST00000531924 NTSP30990 170 aa13.38□□□□□ -0.27
VPS28-215ENST00000531924 SLCO1A2P46721 670 aa13.38□□□□□ -0.27
VPS28-215ENST00000531924 STARP49675 285 aa13.38□□□□□ -0.27
VPS28-215ENST00000531924 CLK3P49761 638 aaKnown RBP13.38□□□□□ -0.27
VPS28-215ENST00000531924 HTR6P50406 440 aa13.38□□□□□ -0.27
VPS28-215ENST00000531924 NCBP2P52298 156 aaKnown RBP eCLIP13.38□□□□□ -0.275e-6■■□□□ 11.5
VPS28-215ENST00000531924 PNLIPRP2P54317 469 aa13.38□□□□□ -0.27
VPS28-215ENST00000531924 GALNT18Q6P9A2 607 aa13.38□□□□□ -0.27
VPS28-215ENST00000531924 CEP112Q8N8E3 955 aa13.38□□□□□ -0.27
VPS28-215ENST00000531924 EFHD2Q96C19 240 aaPredicted RBP13.38□□□□□ -0.27
VPS28-215ENST00000531924 VSTM2LQ96N03 204 aa13.38□□□□□ -0.27
VPS28-215ENST00000531924 KCNA7Q96RP8 456 aa13.38□□□□□ -0.27
VPS28-215ENST00000531924 CXXC4Q9H2H0 198 aa13.38□□□□□ -0.27
VPS28-215ENST00000531924 PIGMQ9H3S5 423 aa13.38□□□□□ -0.27
VPS28-215ENST00000531924 TBK1Q9UHD2 729 aa13.38□□□□□ -0.27
VPS28-215ENST00000531924 FBXL2Q9UKC9 423 aa13.38□□□□□ -0.27
VPS28-215ENST00000531924 MRTO4Q9UKD2 239 aaKnown RBP13.38□□□□□ -0.27
VPS28-215ENST00000531924 ITPR3Q14573 2671 aa13.37□□□□□ -0.27
VPS28-215ENST00000531924 MAP1AP78559 2803 aaPredicted RBP13.37□□□□□ -0.27
VPS28-215ENST00000531924 MTORP42345 2549 aa13.37□□□□□ -0.27
VPS28-215ENST00000531924 PLOD2O00469 737 aa13.37□□□□□ -0.27
VPS28-215ENST00000531924 SCO2O43819 266 aa13.37□□□□□ -0.27
VPS28-215ENST00000531924 TSPAN2O60636 221 aa13.37□□□□□ -0.27
VPS28-215ENST00000531924 GOSR1O95249 250 aa13.37□□□□□ -0.27
VPS28-215ENST00000531924 RAF1P04049 648 aa13.37□□□□□ -0.27
VPS28-215ENST00000531924 JUNP05412 331 aaKnown RBP13.37□□□□□ -0.27
VPS28-215ENST00000531924 KLK2P20151 261 aa13.37□□□□□ -0.27
VPS28-215ENST00000531924 DDCP20711 480 aa13.37□□□□□ -0.27
VPS28-215ENST00000531924 GCAP28676 217 aa13.37□□□□□ -0.27
VPS28-215ENST00000531924 SOX18P35713 384 aa13.37□□□□□ -0.27
VPS28-215ENST00000531924 GFRA1P56159 465 aa13.37□□□□□ -0.27
VPS28-215ENST00000531924 ZNF763Q0D2J5 394 aa13.37□□□□□ -0.27
VPS28-215ENST00000531924 FOXF2Q12947 444 aa13.37□□□□□ -0.27
VPS28-215ENST00000531924 ZNHIT3Q15649 155 aaPredicted RBP13.37□□□□□ -0.27
VPS28-215ENST00000531924 PAMR1Q6UXH9 720 aa13.37□□□□□ -0.27
VPS28-215ENST00000531924 NPSR1Q6W5P4 371 aa13.37□□□□□ -0.27
VPS28-215ENST00000531924 GCNT2Q8N0V5 402 aa13.37□□□□□ -0.27
VPS28-215ENST00000531924 MEIOBQ8N635 442 aa13.37□□□□□ -0.27
VPS28-215ENST00000531924 OR7G2Q8NG99 324 aa13.37□□□□□ -0.27
VPS28-215ENST00000531924 KIF18AQ8NI77 898 aa13.37□□□□□ -0.27
VPS28-215ENST00000531924 TMUB1Q9BVT8 246 aa13.37□□□□□ -0.27
VPS28-215ENST00000531924 DDX18Q9NVP1 670 aaKnown RBP13.37□□□□□ -0.27
VPS28-215ENST00000531924 GALNT8Q9NY28 637 aa13.37□□□□□ -0.27
VPS28-215ENST00000531924 JKAMPQ9P055 326 aa13.37□□□□□ -0.27
VPS28-215ENST00000531924 NDRG3Q9UGV2 375 aa13.37□□□□□ -0.27
VPS28-215ENST00000531924 GRID1Q9ULK0 1009 aa13.37□□□□□ -0.27
VPS28-215ENST00000531924 MRPS18CQ9Y3D5 142 aaKnown RBP13.37□□□□□ -0.27
VPS28-215ENST00000531924 H3BQF6 201 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 SLITRK5O94991 958 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 EVI2BP34910 448 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 CPOXP36551 454 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 MC3RP41968 323 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 RFX3P48380 749 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 LHX2P50458 406 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 DSCR4P56555 118 aaPredicted RBP13.36□□□□□ -0.27
VPS28-215ENST00000531924 EEFSECP57772 596 aaKnown RBP13.36□□□□□ -0.27
VPS28-215ENST00000531924 NAA20P61599 178 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 STX5Q13190 355 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 SLC29A2Q14542 456 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 DECR1Q16698 335 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 CYP27C1Q4G0S4 372 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 RAET1LQ5VY80 246 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 OR2A2Q6IF42 318 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 TMEM107Q6UX40 140 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 UBQLNLQ8IYU4 475 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 CCDC63Q8NA47 563 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 OR4N2Q8NGD1 307 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 DACH2Q96NX9 599 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 ALPK1Q96QP1 1244 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 UCN2Q96RP3 112 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 DSN1Q9H410 356 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 PTGES2Q9H7Z7 377 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 Q9N2J8 555 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 RRAGDQ9NQL2 400 aaPredicted RBP13.36□□□□□ -0.27
VPS28-215ENST00000531924 PACSIN3Q9UKS6 424 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 EIF3LQ9Y262 564 aaKnown RBP13.36□□□□□ -0.27
VPS28-215ENST00000531924 WBP11Q9Y2W2 641 aaKnown RBP13.36□□□□□ -0.27
VPS28-215ENST00000531924 MED13LQ71F56 2210 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 ARHGAP21Q5T5U3 1957 aa13.36□□□□□ -0.27
VPS28-215ENST00000531924 NF1P21359 2839 aa13.35□□□□□ -0.27
VPS28-215ENST00000531924 A0A087WV62 115 aa13.35□□□□□ -0.27
VPS28-215ENST00000531924 SH3D21A4FU49 640 aa13.35□□□□□ -0.27
VPS28-215ENST00000531924 SLC22A20A6NK97 555 aa13.35□□□□□ -0.27
VPS28-215ENST00000531924 MYO1GB0I1T2 1018 aa13.35□□□□□ -0.27
VPS28-215ENST00000531924 GLRA3O75311 464 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms