RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 FAM83FQ8NEG4 500 aaPredicted RBP9.71□□□□□ -0.86
CD44-227ENST00000528086 OR7A2PQ8NGA2 310 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 LILRB4Q8NHJ6 448 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 EFHD2Q96C19 240 aaPredicted RBP9.71□□□□□ -0.86
CD44-227ENST00000528086 COL21A1Q96P44 957 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 BBS4Q96RK4 519 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 LMF2Q9BU23 707 aaKnown RBP9.71□□□□□ -0.86
CD44-227ENST00000528086 UGT2B28Q9BY64 529 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 ENKD1Q9H0I2 346 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 SSU72Q9NP77 194 aaKnown RBP9.71□□□□□ -0.86
CD44-227ENST00000528086 FBXO34Q9NWN3 711 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 ATP6V1HQ9UI12 483 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 CFL2Q9Y281 166 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 MPDZO75970 2070 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 HRNRQ86YZ3 2850 aaPredicted RBP9.71□□□□□ -0.86
CD44-227ENST00000528086 OTOGQ6ZRI0 2925 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 CREBBPQ92793 2442 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 NKX2-6A6NCS4 301 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 PRAMEF25A6NGN4 478 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 CAPN14A8MX76 684 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 BCKDKO14874 412 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 CTIFO43310 598 aaKnown RBP9.7□□□□□ -0.86
CD44-227ENST00000528086 ZIC3O60481 467 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 SKAP2O75563 359 aaPredicted RBP9.7□□□□□ -0.86
CD44-227ENST00000528086 REM1O75628 298 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 C1QCP02747 245 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 ACP2P11117 423 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 NEFHP12036 1026 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 BMP7P18075 431 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 GDF1P27539 372 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 SMSP52788 366 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 NRG3P56975 720 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 B3GALT5-AS1P59052 145 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 PHC1P78364 1004 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 HSPB3Q12988 150 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 CHI3L2Q15782 390 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 NHSL2Q5HYW2 709 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 TBCELQ5QJ74 424 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 TMEM198Q66K66 360 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 OR5M10Q6IEU7 315 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 SLC30A6Q6NXT4 461 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 DDIASQ8IXT1 998 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 ULK2Q8IYT8 1036 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 SAMD14Q8IZD0 417 aaPredicted RBP9.7□□□□□ -0.86
CD44-227ENST00000528086 PGM2Q96G03 612 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 C16orf58Q96GQ5 468 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 WDYHV1Q96HA8 205 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 C1orf50Q9BV19 199 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 OSBPL11Q9BXB4 747 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 OR2B2Q9GZK3 357 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 MIEF1Q9NQG6 463 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 HAO1Q9UJM8 370 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 MAPRE3Q9UPY8 281 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 HEATR5AQ86XA9 2040 aa9.7□□□□□ -0.86
CD44-227ENST00000528086 ANKRD28O15084 1053 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 SCAMP2O15127 329 aaKnown RBP9.69□□□□□ -0.86
CD44-227ENST00000528086 RGS16O15492 202 aaPredicted RBP9.69□□□□□ -0.86
CD44-227ENST00000528086 PDPK1O15530 556 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 HNRNPRO43390 633 aaKnown RBP9.69□□□□□ -0.86
CD44-227ENST00000528086 BCAS2O75934 225 aaPredicted RBP9.69□□□□□ -0.86
CD44-227ENST00000528086 SERPINE1P05121 402 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 IFI6P09912 130 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 BGNP21810 368 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 SERPINB5P36952 375 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 TMED10P49755 219 aaKnown RBP9.69□□□□□ -0.86
CD44-227ENST00000528086 PNLIPRP2P54317 469 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 GFRA1P56159 465 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 DLX5P56178 289 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 CLDN15P56746 228 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 SNTA1Q13424 505 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 ACSF3Q4G176 576 aaPredicted RBP9.69□□□□□ -0.86
CD44-227ENST00000528086 C1orf185Q5T7R7 199 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 C6orf163Q5TEZ5 329 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 PAOXQ6QHF9 649 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 LARP4Q71RC2 724 aaKnown RBP eCLIP9.69□□□□□ -0.86
CD44-227ENST00000528086 PACS2Q86VP3 889 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 NUDCD3Q8IVD9 361 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 MCEMP1Q8IX19 187 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 LIX1Q8N485 282 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 FADS6Q8N9I5 356 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 SLC16A11Q8NCK7 471 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 FAM110BQ8TC76 370 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 PIK3R3Q92569 461 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 RND1Q92730 232 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 COQ8BQ96D53 544 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 OTUB1Q96FW1 271 aaPredicted RBP9.69□□□□□ -0.86
CD44-227ENST00000528086 NPAS1Q99742 590 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 PRDM14Q9GZV8 571 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 IQCGQ9H095 443 aaKnown RBP9.69□□□□□ -0.86
CD44-227ENST00000528086 STMN4Q9H169 189 aaPredicted RBP9.69□□□□□ -0.86
CD44-227ENST00000528086 LDAHQ9H6V9 325 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 METTL7AQ9H8H3 244 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 GIMAP4Q9NUV9 329 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 TAS2R9Q9NYW1 312 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 SENP1Q9P0U3 644 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 SH3BP4Q9P0V3 963 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 ACAD8Q9UKU7 415 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 WIF1Q9Y5W5 379 aa9.69□□□□□ -0.86
CD44-227ENST00000528086 MYO9AB2RTY4 2548 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 BIRC5O15392 142 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms