RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 DRD5P21918 477 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 CALB2P22676 271 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 SLC6A2P23975 617 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 ABCD3P28288 659 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 TRHRP34981 398 aaPredicted RBP12.65□□□□□ -0.38
CD44-224ENST00000526669 SLC7A2P52569 658 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 NRG3P56975 720 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 FBXW4P57775 412 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 MRPS22P82650 360 aaKnown RBP12.65□□□□□ -0.38
CD44-224ENST00000526669 FUT5Q11128 374 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 SYPL1Q16563 259 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 LINC00303Q3SY05 128 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 LYPD8Q6UX82 237 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 HACD2Q6Y1H2 254 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 C16orf62Q7Z3J2 963 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 ZAR1Q86SH2 424 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 TMEM156Q8N614 296 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 BCORP1Q8N888 145 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 RBM15BQ8NDT2 890 aaKnown RBP12.65□□□□□ -0.38
CD44-224ENST00000526669 OR10A6Q8NH74 314 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 MIPOL1Q8TD10 442 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 HOXB13Q92826 284 aaPredicted RBP12.65□□□□□ -0.38
CD44-224ENST00000526669 TP53INP1Q96A56 240 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 TMEM125Q96AQ2 219 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 STACQ99469 402 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 GPATCH1Q9BRR8 931 aaKnown RBP12.65□□□□□ -0.38
CD44-224ENST00000526669 ARHGAP9Q9BRR9 750 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 DUSP22Q9NRW4 184 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 CMTM6Q9NX76 183 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 GIN1Q9NXP7 522 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 ABI3Q9P2A4 366 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 NPFFR2Q9Y5X5 522 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 ITPR1Q14643 2758 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 ZNF407Q9C0G0 2248 aa12.65□□□□□ -0.38
CD44-224ENST00000526669 MED12Q93074 2177 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 TLN1Q9Y490 2541 aaKnown RBP12.64□□□□□ -0.39
CD44-224ENST00000526669 PRAMEF27A3QJZ7 478 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 TTC36A6NLP5 189 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 MKRN2OSH3BPM6 223 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 NME4O00746 187 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 TO15178 435 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 ACOX3O15254 700 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 SLC28A2O43868 658 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 KCNK2O95069 426 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 NPPAP01160 153 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 PDGFAP04085 211 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 IL12BP29460 328 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 KRT20P35900 424 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 OC90Q02509 493 aaPredicted RBP12.64□□□□□ -0.39
CD44-224ENST00000526669 GABPB1Q06547 395 aaPredicted RBP12.64□□□□□ -0.39
CD44-224ENST00000526669 FADDQ13158 208 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 MFAP5Q13361 173 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 DECR1Q16698 335 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 CYP51A1Q16850 503 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 GPAT3Q53EU6 434 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 DCST2Q5T1A1 773 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 GCNT6Q5T4J0 391 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 ATAD3BQ5T9A4 648 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 C8orf82Q6P1X6 216 aaPredicted RBP12.64□□□□□ -0.39
CD44-224ENST00000526669 HMGN2P46Q86SG4 172 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 DEFB107AQ8IZN7 70 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 ANKFN1Q8N957 763 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 FAM13CQ8NE31 585 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 C17orf47Q8NEP4 570 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 OR8J3Q8NGG0 315 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 MAL2Q969L2 176 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 ECSITQ9BQ95 431 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 BTBD2Q9BX70 525 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 EXD2Q9NVH0 621 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 HPF1Q9NWY4 346 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 FLRT3Q9NZU0 649 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 CORO2BQ9UQ03 480 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 TP53TG5Q9Y2B4 290 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 L3MBTL1Q9Y468 752 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 CSAG2Q9Y5P2 127 aa12.64□□□□□ -0.39
CD44-224ENST00000526669 DUXAA6NLW8 204 aa12.63□□□□□ -0.39
CD44-224ENST00000526669 TSPAN2O60636 221 aa12.63□□□□□ -0.39
CD44-224ENST00000526669 UGT2B11O75310 529 aa12.63□□□□□ -0.39
CD44-224ENST00000526669 TNFRSF21O75509 655 aa12.63□□□□□ -0.39
CD44-224ENST00000526669 PPM1BO75688 479 aa12.63□□□□□ -0.39
CD44-224ENST00000526669 ITGB2P05107 769 aa12.63□□□□□ -0.39
CD44-224ENST00000526669 BCHEP06276 602 aa12.63□□□□□ -0.39
CD44-224ENST00000526669 FBXO45P0C2W1 286 aa12.63□□□□□ -0.39
CD44-224ENST00000526669 NR2F1P10589 423 aa12.63□□□□□ -0.39
CD44-224ENST00000526669 CYP4B1P13584 511 aa12.63□□□□□ -0.39
CD44-224ENST00000526669 GPX2P18283 190 aa12.63□□□□□ -0.39
CD44-224ENST00000526669 CPOXP36551 454 aa12.63□□□□□ -0.39
CD44-224ENST00000526669 PIGAP37287 484 aa12.63□□□□□ -0.39
CD44-224ENST00000526669 RNF144AP50876 292 aaPredicted RBP12.63□□□□□ -0.39
CD44-224ENST00000526669 ANXA11P50995 505 aaKnown RBP12.63□□□□□ -0.39
CD44-224ENST00000526669 ARG2P78540 354 aa12.63□□□□□ -0.39
CD44-224ENST00000526669 KCNAB2Q13303 367 aa12.63□□□□□ -0.39
CD44-224ENST00000526669 TUBA3CQ13748 450 aa12.63□□□□□ -0.39
CD44-224ENST00000526669 RPS26P11Q5JNZ5 115 aaPredicted RBP12.63□□□□□ -0.39
CD44-224ENST00000526669 TUBA3EQ6PEY2 450 aa12.63□□□□□ -0.39
CD44-224ENST00000526669 OPN5Q6U736 354 aa12.63□□□□□ -0.39
CD44-224ENST00000526669 C16orf89Q6UX73 402 aa12.63□□□□□ -0.39
CD44-224ENST00000526669 IFNEQ86WN2 208 aa12.63□□□□□ -0.39
CD44-224ENST00000526669 SLC15A3Q8IY34 581 aa12.63□□□□□ -0.39
CD44-224ENST00000526669 PGAM4Q8N0Y7 254 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms