RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 MSLNLQ96KJ4 702 aa19.89■□□□□ 0.77
VPS28-205ENST00000526204 PRR14Q9BWN1 585 aa19.89■□□□□ 0.77
VPS28-205ENST00000526204 MTHFD2LQ9H903 347 aaPredicted RBP19.89■□□□□ 0.77
VPS28-205ENST00000526204 CACYBPQ9HB71 228 aaKnown RBP19.89■□□□□ 0.77
VPS28-205ENST00000526204 CNIH4Q9P003 139 aa19.89■□□□□ 0.77
VPS28-205ENST00000526204 GRIP1Q9Y3R0 1128 aa19.89■□□□□ 0.77
VPS28-205ENST00000526204 TNFRSF4P43489 277 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 RGS8P57771 180 aaPredicted RBP19.88■□□□□ 0.77
VPS28-205ENST00000526204 CARTPTQ16568 116 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 AGAP6Q5VW22 663 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 OR4E2Q8NGC2 313 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 SLC22A18Q96BI1 424 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 C1GALT1C1Q96EU7 318 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 AGAP4Q96P64 663 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 MS4A4EQ96PG1 132 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 OR2M4Q96R27 311 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 SYNPO2LQ9H987 977 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 MED17Q9NVC6 651 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 MUTYHQ9UIF7 546 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 ZNF232Q9UNY5 417 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 GSTK1Q9Y2Q3 226 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 GPR52Q9Y2T5 361 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 TBC1D3KA0A087X1G2 549 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 TBC1D3FA6NER0 549 aaPredicted RBP19.88■□□□□ 0.77
VPS28-205ENST00000526204 FRS3O43559 492 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 GABRA5P31644 462 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 TRHRP34981 398 aaPredicted RBP19.88■□□□□ 0.77
VPS28-205ENST00000526204 AVPR1BP47901 424 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 MXD1Q05195 221 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 FLYWCH1Q4VC44 716 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 ARMC4Q5T2S8 1044 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 OR2G6Q5TZ20 316 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 TBC1D3GQ6DHY5 549 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 PLEKHM3Q6ZWE6 761 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 LRRC25Q8N386 305 aaPredicted RBP19.88■□□□□ 0.77
VPS28-205ENST00000526204 FAM181AQ8N9Y4 354 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 NT5CQ8TCD5 201 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 GATAD2BQ8WXI9 593 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 TMEM203Q969S6 136 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 SLC35A4Q96G79 324 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 TMEM106CQ9BVX2 250 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 SRRQ9GZT4 340 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 MKRN2Q9H000 416 aaKnown RBP19.88■□□□□ 0.77
VPS28-205ENST00000526204 ANKRA2Q9H9E1 313 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 MOV10Q9HCE1 1003 aaKnown RBP19.88■□□□□ 0.77
VPS28-205ENST00000526204 FGF22Q9HCT0 170 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 IL20Q9NYY1 176 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 SF3B6Q9Y3B4 125 aaKnown RBP19.88■□□□□ 0.77
VPS28-205ENST00000526204 CHST2Q9Y4C5 530 aa19.88■□□□□ 0.77
VPS28-205ENST00000526204 TBC1D3DA0A087WVF3 549 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 TBC1D3IA0A087WXS9 549 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 TBC1D3EA0A087X179 549 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 PRSS38A1L453 326 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 TBC1D3LB9A6J9 549 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 OR5F1O95221 314 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 TBC1D3HP0C7X1 549 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 MSL3P1P0C860 447 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 KIR2DL1P43626 348 aaPredicted RBP19.87■□□□□ 0.77
VPS28-205ENST00000526204 MLLT1Q03111 559 aaPredicted RBP19.87■□□□□ 0.77
VPS28-205ENST00000526204 HNRNPA0Q13151 305 aaKnown RBP19.87■□□□□ 0.77
VPS28-205ENST00000526204 LTB4RQ15722 352 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 ZNF79Q15937 498 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 TBC1D3CQ6IPX1 549 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 MFSD12Q6NUT3 480 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 CDC73Q6P1J9 531 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 VN1R4Q7Z5H5 301 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 ASPGQ86U10 573 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 MEX3DQ86XN8 651 aaKnown RBP19.87■□□□□ 0.77
VPS28-205ENST00000526204 TBC1D3Q8IZP1 549 aaPredicted RBP19.87■□□□□ 0.77
VPS28-205ENST00000526204 POGLUT1Q8NBL1 392 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 KCT2Q8NC54 265 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 TM9SF4Q92544 642 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 AP3S1Q92572 193 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 C10orf90Q96M02 699 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 ARHGAP9Q9BRR9 750 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 MCOLN1Q9GZU1 580 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 NLGN3Q9NZ94 848 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 KLF15Q9UIH9 416 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 PHF11Q9UIL8 331 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 MYO10Q9HD67 2058 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 C2orf16Q68DN1 1984 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 FCMRO60667 390 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 SLC35G6P0C7Q6 338 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 GDI1P31150 447 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 MAT2AP31153 395 aaKnown RBP19.87■□□□□ 0.77
VPS28-205ENST00000526204 FGF9P31371 208 aaPredicted RBP19.87■□□□□ 0.77
VPS28-205ENST00000526204 PDX1P52945 283 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 ADPRHP54922 357 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 CDH11P55287 796 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 MAP4K2Q12851 820 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 XKRXQ6PP77 449 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 QSOX2Q6ZRP7 698 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 CELF2-AS1Q8N7Q2 184 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 MCHR1Q99705 422 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 KRCC1Q9NPI7 259 aaPredicted RBP19.87■□□□□ 0.77
VPS28-205ENST00000526204 PLEKHB1Q9UF11 243 aaPredicted RBP19.87■□□□□ 0.77
VPS28-205ENST00000526204 TBC1D29Q9UFV1 150 aa19.87■□□□□ 0.77
VPS28-205ENST00000526204 HTR3EA5X5Y0 456 aa19.86■□□□□ 0.77
VPS28-205ENST00000526204 HOXC4P09017 264 aaPredicted RBP19.86■□□□□ 0.77
VPS28-205ENST00000526204 ZNF888P0CJ79 500 aaPredicted RBP19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms