RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 CLDN2P57739 230 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 ST3GAL3Q11203 375 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 DECR1Q16698 335 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 HNRNPA1L2Q32P51 320 aaKnown RBP12.44□□□□□ -0.42
TCOF1-213ENST00000514442 CHCHD4Q8N4Q1 142 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 AVL9Q8NBF6 648 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 PLA2G15Q8NCC3 412 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 SLC22A8Q8TCC7 542 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 NECTIN4Q96NY8 510 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 METTL21EPA6NDL7 271 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 KLKB1P03952 638 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 ZNF823P16415 610 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 GSTM3P21266 225 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 DUSP6Q16828 381 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 PRPF38BQ5VTL8 546 aaKnown RBP12.44□□□□□ -0.42
TCOF1-213ENST00000514442 PYHIN1Q6K0P9 492 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 USP53Q70EK8 1073 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 TCTE3Q8IZS6 198 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 GATAD2BQ8WXI9 593 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 OR5P2Q8WZ92 322 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 KIAA1143Q96AT1 154 aaPredicted RBP12.44□□□□□ -0.42
TCOF1-213ENST00000514442 OR2M2Q96R28 347 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 KLRF1Q9NZS2 232 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 SERTAD3Q9UJW9 196 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 ZFR2Q9UPR6 939 aaKnown RBP12.44□□□□□ -0.42
TCOF1-213ENST00000514442 H3BUI4 141 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 PSMD9O00233 223 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 ARHGAP33O14559 1287 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 AKR7A2O43488 359 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 PTHP01270 115 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 LAMP1P11279 417 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 HOXD8P13378 290 aaPredicted RBP12.44□□□□□ -0.42
TCOF1-213ENST00000514442 TIMP2P16035 220 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 S100A2P29034 98 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 ADRA1AP35348 466 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 FLI1Q01543 452 aaPredicted RBP12.44□□□□□ -0.42
TCOF1-213ENST00000514442 GRK1Q15835 563 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 USF2Q15853 346 aaPredicted RBP12.44□□□□□ -0.42
TCOF1-213ENST00000514442 GAREM2Q75VX8 874 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 DTX3Q8N9I9 347 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 ARAP2Q8WZ64 1704 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 OR51I1Q9H343 314 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 KIAA1551Q9HCM1 1747 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 GALNT9Q9HCQ5 603 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 EMC7Q9NPA0 242 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 TNFRSF10DQ9UBN6 386 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 FCER2P06734 321 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 MYOGP15173 224 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 MNDAP41218 407 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 DEFB110Q30KQ9 67 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 CPZQ66K79 652 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 SDR16C5Q8N3Y7 309 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 DNAJC5GQ8N7S2 189 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 CCDC107Q8WV48 283 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 FAM3CQ92520 227 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 S100PBPQ96BU1 408 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 SPATA6Q9NWH7 488 aaPredicted RBP12.44□□□□□ -0.42
TCOF1-213ENST00000514442 SCP2D1Q9UJQ7 156 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 HRH3Q9Y5N1 445 aa12.44□□□□□ -0.42
TCOF1-213ENST00000514442 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.43□□□□□ -0.42
TCOF1-213ENST00000514442 SCAMP2O15127 329 aaKnown RBP12.43□□□□□ -0.42
TCOF1-213ENST00000514442 TFP02787 698 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 HSD3B1P14060 373 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 HSD3B2P26439 372 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 CLDN8P56748 225 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 MC2RQ01718 297 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 SNTB2Q13425 540 aaKnown RBP12.43□□□□□ -0.42
TCOF1-213ENST00000514442 LIPIQ6XZB0 460 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 INO80EQ8NBZ0 244 aaPredicted RBP12.43□□□□□ -0.42
TCOF1-213ENST00000514442 NUP43Q8NFH3 380 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 ARL5BQ96KC2 179 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 MCHR1Q99705 422 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 KATNBL1Q9H079 304 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 DUSP21Q9H596 190 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 PRTFDC1Q9NRG1 225 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 H3BSH0 61 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 RFXAPO00287 272 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 TP53P04637 393 aaPredicted RBP12.43□□□□□ -0.42
TCOF1-213ENST00000514442 ALDOBP05062 364 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 SLC35F1Q5T1Q4 408 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 CBARPQ8N350 705 aaPredicted RBP12.43□□□□□ -0.42
TCOF1-213ENST00000514442 C7orf57Q8NEG2 295 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 ZNF548Q8NEK5 533 aaPredicted RBP12.43□□□□□ -0.42
TCOF1-213ENST00000514442 PROKR1Q8TCW9 393 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 METTL2AQ96IZ6 378 aaKnown RBP12.43□□□□□ -0.42
TCOF1-213ENST00000514442 PTCHD1Q96NR3 888 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 DCLRE1CQ96SD1 692 aaKnown RBP12.43□□□□□ -0.42
TCOF1-213ENST00000514442 A0A0X1KG70 313 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 PRMT3O60678 531 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 WDPCPO95876 746 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 RENP00797 406 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 THEGLP0DJG4 465 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 ZNF14P17017 642 aaPredicted RBP12.43□□□□□ -0.42
TCOF1-213ENST00000514442 IL1RNP18510 177 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 CELP19835 753 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 CNR2P34972 360 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 CTSL3PQ5NE16 218 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 METTL2BQ6P1Q9 378 aaKnown RBP12.43□□□□□ -0.42
TCOF1-213ENST00000514442 ZCCHC12Q6PEW1 402 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 ARL9Q6T311 187 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms