RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 HOXA6P31267 233 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 HOXC5Q00444 222 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 RHAGQ02094 409 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 RGS1Q08116 209 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 KIR2DS3Q14952 304 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 ZIC1Q15915 447 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 ATG9BQ674R7 924 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 ARSKQ6UWY0 536 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 AQP12AQ8IXF9 295 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 KLHDC8AQ8IYD2 350 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 MINDY2Q8NBR6 621 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 DEFB124Q8NES8 71 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 OR5T3Q8NGG3 340 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 UBTD2Q8WUN7 234 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 UBE2E3Q969T4 207 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 ZDHHC12Q96GR4 267 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 RADILQ96JH8 1075 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 DUSP23Q9BVJ7 150 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 MS4A7Q9GZW8 240 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 PDE7BQ9NP56 450 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 TMEM9BQ9NQ34 198 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 DMRT3Q9NQL9 472 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 QPCTLQ9NXS2 382 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 PIEZO1Q92508 2521 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 IGHV1OR21-1A0A087WYE8 117 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 A0A1W2PRG6 482 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 B4GALT2O60909 372 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 CAPZBP47756 277 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 OR1D4P47884 311 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 ERVK-8P63133 956 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 ZC3H12BQ5HYM0 836 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 SPANXN4Q5MJ08 99 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 GTF2IRD2BQ6EKJ0 949 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 NOXRED1Q6NXP6 359 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 ASPGQ86U10 573 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 GTF2IRD2Q86UP8 949 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 PRSS33Q8NF86 280 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 GPR151Q8TDV0 419 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 RELTQ969Z4 430 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 MMABQ96EY8 250 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 DPYSL5Q9BPU6 564 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 ZFYVE21Q9BQ24 234 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 SYNPO2LQ9H987 977 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 MEAF6Q9HAF1 191 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 WASH6PQ9NQA3 447 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 MCUBQ9NWR8 336 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 PPIEQ9UNP9 301 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 MRPS2Q9Y399 296 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 SPAARA0A1B0GVQ0 90 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 P2RX6O15547 441 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 DFNA5O60443 496 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 SLC22A3O75751 556 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 PDGFAP04085 211 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 STSP08842 583 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 IL32P24001 234 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 GDI2P50395 445 aaKnown RBP8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 ZNF81P51508 661 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 CAV3P56539 151 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 MVKQ03426 396 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 CDK5R2Q13319 367 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 GARNL3Q5VVW2 1013 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 OR4F3Q6IEY1 312 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 B3GNT8Q7Z7M8 397 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 PLXDC1Q8IUK5 500 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 MCATQ8IVS2 390 aaKnown RBP8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 LRRC56Q8IYG6 542 aaPredicted RBP8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 C19orf47Q8N9M1 422 aaKnown RBP8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 TTC29Q8NA56 475 aaPredicted RBP8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 OR9A4Q8NGU2 314 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 OR4C6Q8NH72 309 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 SPPL2AQ8TCT8 520 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 UCN3Q969E3 161 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 COQ8BQ96D53 544 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 FAM120BQ96EK7 910 aaKnown RBP8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 SPRTNQ9H040 489 aaPredicted RBP8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 KRT84Q9NSB2 600 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 SERPINA1P01009 418 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 FGF4P08620 206 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 IL3P08700 152 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 GPC1P35052 558 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 SNRPNP63162 240 aaKnown RBP8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 SIM1P81133 766 aaPredicted RBP8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 LRRC74AQ0VAA2 488 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 TSTQ16762 297 aaKnown RBP8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 CLVS2Q5SYC1 327 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 MLIPQ5VWP3 458 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 TYW3Q6IPR3 259 aaKnown RBP8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 ZNF621Q6ZSS3 439 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 LARP4Q71RC2 724 aaKnown RBP eCLIP8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 BMP8AQ7Z5Y6 402 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 RASGRP3Q8IV61 690 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 OR5AK3PQ8NH89 298 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 CMTM7Q96FZ5 175 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 ZC3H10Q96K80 434 aaKnown RBP8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 OR52E6Q96RD3 313 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 TM9SF2Q99805 663 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 TUBA1CQ9BQE3 449 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 SLC30A2Q9BRI3 323 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 MENTQ9BUN1 341 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 SLC29A3Q9BZD2 475 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms