RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 SPG11Q96JI7 2443 aa13.13□□□□□ -0.31
HMGCS1-203ENST00000507004 NCKAP5O14513 1909 aa13.13□□□□□ -0.31
HMGCS1-203ENST00000507004 ANKRD17O75179 2603 aaKnown RBP13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 COPEO14579 308 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 RGS14O43566 566 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 PLIN3O60664 434 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 RCBTB2O95199 551 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 CHEK2O96017 543 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 CRHP06850 196 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 FAM153BP0C7A2 387 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 TMIGD3P0DMS9 266 aaPredicted RBP13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 CPA3P15088 417 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 NCBP2P52298 156 aaKnown RBP eCLIP13.12□□□□□ -0.311e-7■□□□□ 11
HMGCS1-203ENST00000507004 ZNF136P52737 540 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 DGKQP52824 942 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 DSCR4P56555 118 aaPredicted RBP13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 ZNF155Q12901 538 aaPredicted RBP13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 DAZAP2Q15038 168 aaPredicted RBP13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 DECR1Q16698 335 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 FAM153CQ494X1 144 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 LIPMQ5VYY2 423 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 FAM71E1Q6IPT2 247 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 CHMP1BQ7LBR1 199 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 SLC44A2Q8IWA5 706 aaPredicted RBP13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 TRIM42Q8IWZ5 723 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 ZZZ3Q8IYH5 903 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 NAXEQ8NCW5 288 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 OR4K17Q8NGC6 315 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 ZFP28Q8NHY6 868 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 UBLCP1Q8WVY7 318 aaPredicted RBP13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 SFXN2Q96NB2 322 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 EBPLQ9BY08 206 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 POLDIP3Q9BY77 421 aaKnown RBP13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 EPB41L4BQ9H329 900 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 PTGES2Q9H7Z7 377 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 GALNT9Q9HCQ5 603 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 RASSF1Q9NS23 344 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 DDX18Q9NVP1 670 aaKnown RBP13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 OXSMQ9NWU1 459 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 DKKL1Q9UK85 242 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 EMCNQ9ULC0 261 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 ADGRG4Q8IZF6 3080 aa13.12□□□□□ -0.31
HMGCS1-203ENST00000507004 CSMD1Q96PZ7 3565 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 FBN2P35556 2912 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 FAM221AA4D161 298 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 TUBAL3A6NHL2 446 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 PEPDP12955 493 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 GRK2P25098 689 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 PCYT1AP49585 367 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 DIO3P55073 304 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 GFRA1P56159 465 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 PSG6Q00889 435 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 VPS26BQ4G0F5 336 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 OR2A2Q6IF42 318 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 NOXRED1Q6NXP6 359 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 FAM180BQ6P0A1 224 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 SH2D5Q6ZV89 423 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 ADGRE4PQ86SQ3 457 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 OR2L13Q8N349 312 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 RIBC1Q8N443 379 aaPredicted RBP13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 SIMC1Q8NDZ2 872 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 CHDHQ8NE62 594 aaPredicted RBP13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 OR7G2Q8NG99 324 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 KCNA7Q96RP8 456 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 FOXC2Q99958 501 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 CLEC4MQ9H2X3 399 aaPredicted RBP13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 FAM120CQ9NX05 1096 aaKnown RBP13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 JKAMPQ9P055 326 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 PPP4R1LQ9P1A2 415 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 STOML1Q9UBI4 398 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 TMED5Q9Y3A6 229 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 POLQO75417 2590 aa13.11□□□□□ -0.31
HMGCS1-203ENST00000507004 PDZD2O15018 2839 aa13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 A0A1W2PPM1 405 aa13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 A6NNC1 897 aa13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 UBFD1O14562 309 aaKnown RBP13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 TBX19O60806 448 aa13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 JUNP05412 331 aaKnown RBP13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 EPXP11678 715 aa13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 DPP4P27487 766 aa13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 DNAJA1P31689 397 aaKnown RBP13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 EVI2BP34910 448 aa13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 ART1P52961 327 aa13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 CORO7P57737 925 aa13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 OCRLQ01968 901 aa13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 FGFBP1Q14512 234 aa13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 GLYR1Q49A26 553 aaPredicted RBP13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 POMZP3Q6PJE2 187 aa13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 NPSR1Q6W5P4 371 aa13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 CAMKMTQ7Z624 323 aa13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 MEIOBQ8N635 442 aa13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 CEP70Q8NHQ1 597 aa13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 CDC26Q8NHZ8 85 aa13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 ELP4Q96EB1 424 aa13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 RMND5BQ96G75 393 aaPredicted RBP13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 CCT7Q99832 543 aa13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 LMF2Q9BU23 707 aaKnown RBP13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 C1orf109Q9NX04 203 aa13.1□□□□□ -0.31
HMGCS1-203ENST00000507004 MKS1Q9NXB0 559 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms