RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 C6orf132Q5T0Z8 1188 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 ZNF730Q6ZMV8 503 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 C16orf62Q7Z3J2 963 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 PAQR7Q86WK9 346 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 NRROSQ86YC3 692 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 NKAIN4Q8IVV8 208 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 SIMC1Q8NDZ2 872 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 SRFBP1Q8NEF9 429 aaKnown RBP9.23□□□□□ -0.93
CLIP1-204ENST00000501271 OR7G2Q8NG99 324 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 GATAD2BQ8WXI9 593 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 SLC25A46Q96AG3 418 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 SLC35A4Q96G79 324 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 C10orf90Q96M02 699 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 RPP25Q9BUL9 199 aaKnown RBP9.23□□□□□ -0.93
CLIP1-204ENST00000501271 KIR3DX1Q9H7L2 352 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 FGF20Q9NP95 211 aaPredicted RBP9.23□□□□□ -0.93
CLIP1-204ENST00000501271 MRPS18AQ9NVS2 196 aaKnown RBP9.23□□□□□ -0.93
CLIP1-204ENST00000501271 SLC13A4Q9UKG4 626 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 ZNF780BQ9Y6R6 833 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 FANCMQ8IYD8 2048 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 PRSS38A1L453 326 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 K7EQS6 105 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 CH25HO95992 272 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 GNSP15586 552 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 PTNP21246 168 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 AK4P27144 223 aaPredicted RBP9.23□□□□□ -0.93
CLIP1-204ENST00000501271 MTNR1AP48039 350 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 RAB40BQ12829 278 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 HNRNPA0Q13151 305 aaKnown RBP9.23□□□□□ -0.93
CLIP1-204ENST00000501271 KRR1Q13601 381 aaKnown RBP9.23□□□□□ -0.93
CLIP1-204ENST00000501271 BAK1Q16611 211 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 MINDY4Q4G0A6 757 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 KLHL22Q53GT1 634 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 SLC30A6Q6NXT4 461 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 TMPRSS11AQ6ZMR5 421 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 RASSF6Q6ZTQ3 369 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 AMIGO1Q86WK6 493 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 C7orf61Q8IZ16 206 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 SYT14Q8NB59 555 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 SLC16A11Q8NCK7 471 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 ANKK1Q8NFD2 765 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 IL17RDQ8NFM7 739 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 OR4Q3Q8NH05 313 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 FGF14Q92915 247 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 WDFY2Q96P53 400 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 ACTRT3Q9BYD9 372 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 SRRQ9GZT4 340 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 IGFLR1Q9H665 355 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 POU2F3Q9UKI9 436 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 SF3B6Q9Y3B4 125 aaKnown RBP9.23□□□□□ -0.93
CLIP1-204ENST00000501271 TBC1D3DA0A087WVF3 549 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 TBC1D3IA0A087WXS9 549 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 TBC1D3EA0A087X179 549 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 TBC1D3KA0A087X1G2 549 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 TMEM129A0AVI4 362 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 SMIM30A4D0T7 59 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 TBC1D3FA6NER0 549 aaPredicted RBP9.22□□□□□ -0.93
CLIP1-204ENST00000501271 POM121BA6NF01 834 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 KDM4EB2RXH2 506 aaPredicted RBP9.22□□□□□ -0.93
CLIP1-204ENST00000501271 TBC1D3LB9A6J9 549 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 PIP5K1CO60331 668 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 KCNJ13O60928 360 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 IL1AP01583 271 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 APOA1P02647 267 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 TSPAN19P0C672 248 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 TBC1D3HP0C7X1 549 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 LIMS3P0CW19 117 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 LIMS4P0CW20 117 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 GPR4P46093 362 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 CLDN2P57739 230 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 ERVK-21P61565 698 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 RUNX1T1Q06455 604 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 ST3GAL3Q11203 375 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 TBC1D3GQ6DHY5 549 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 TBC1D3CQ6IPX1 549 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 PARM1Q6UWI2 310 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 FRRS1Q6ZNA5 592 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 NRARPQ7Z6K4 114 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 LAPTM4BQ86VI4 370 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 TBC1D3Q8IZP1 549 aaPredicted RBP9.22□□□□□ -0.93
CLIP1-204ENST00000501271 ZFP41Q8N8Y5 198 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 OR52P1PQ8NH57 321 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 LCN9Q8WX39 176 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 CDS1Q92903 461 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 GAL3ST3Q96A11 431 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 FAM131CQ96AQ9 280 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 SCARF2Q96GP6 870 aaPredicted RBP9.22□□□□□ -0.93
CLIP1-204ENST00000501271 OR2M4Q96R27 311 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 MYADMQ96S97 322 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 TM9SF2Q99805 663 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 MIXL1Q9H2W2 232 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 SIAEQ9HAT2 523 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 TMEM74BQ9NUR3 256 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 LYARQ9NX58 379 aaKnown RBP9.22□□□□□ -0.93
CLIP1-204ENST00000501271 TOR4AQ9NXH8 423 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 CALML5Q9NZT1 146 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 PLEKHB1Q9UF11 243 aaPredicted RBP9.22□□□□□ -0.93
CLIP1-204ENST00000501271 KLF15Q9UIH9 416 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 SNX7Q9UNH6 387 aa9.22□□□□□ -0.93
CLIP1-204ENST00000501271 LIPT1Q9Y234 373 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms