RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 LEG1Q6P5S2 330 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 TMEFF1Q8IYR6 380 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 MED30Q96HR3 178 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 ATG5Q9H1Y0 275 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 SLC39A1Q9NY26 324 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 LRRN3E7EW58 273 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 UGDHO60701 494 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 CKMT1AP12532 417 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 MYF6P23409 242 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 FRKP42685 505 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-215ENST00000496447 KCNAB2Q13303 367 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 UGT2A3Q6UWM9 527 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 MCATQ8IVS2 390 aaKnown RBP12.45□□□□□ -0.42
PTPRF-215ENST00000496447 ARHGAP12Q8IWW6 846 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 PRR22Q8IZ63 422 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 ZNF675Q8TD23 568 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 DEDD2Q8WXF8 326 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 LRRN3Q9H3W5 708 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 IGSF5Q9NSI5 407 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 C2orf42Q9NWW7 574 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 NDUFAF4Q9P032 175 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 LRIT1Q9P2V4 623 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 HSFX1Q9UBD0 423 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 ANKRD33BA6NCL7 494 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 ARHGEF15O94989 841 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 CD63P08962 238 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 PYCR1P32322 319 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 THBS2P35442 1172 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 RBMXP38159 391 aaKnown RBP12.45□□□□□ -0.42
PTPRF-215ENST00000496447 MAGEA12P43365 314 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 KDELC1Q6UW63 502 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 IGFN1Q86VF2 1251 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.45□□□□□ -0.42
PTPRF-215ENST00000496447 CDRT4Q8N9R6 151 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 OR8J1Q8NGP2 316 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 OR2T4Q8NH00 348 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 RTP4Q96DX8 246 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 UHRF1Q96T88 793 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-215ENST00000496447 SIT1Q9Y3P8 196 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 TRAPPC13A5PLN9 417 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 H3BMQ9 156 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 CLIC3O95833 236 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 MAOBP27338 520 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 GMPRP36959 345 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 XCR1P46094 333 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 HTR6P50406 440 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 FAM76BQ5HYJ3 339 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 CEACAM19Q7Z692 300 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 LHFPL3Q86UP9 236 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 EID2Q8N6I1 236 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 OR9A2Q8NGT5 310 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 GPR150Q8NGU9 434 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 CNIH3Q8TBE1 160 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 COG8Q96MW5 612 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 UQCC2Q9BRT2 126 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 ZNF471Q9BX82 626 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-215ENST00000496447 KATNBL1Q9H079 304 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 TMEM185BQ9H7F4 350 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 CPNE7Q9UBL6 633 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 CEPT1Q9Y6K0 416 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 KAT6AQ92794 2004 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 ZCWPW2A0A1B0GU75 182 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 WASH4PA8MWX3 477 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 PHYHO14832 338 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 CFL1P23528 166 aaKnown RBP12.44□□□□□ -0.42
PTPRF-215ENST00000496447 MFSD13AQ14CX5 517 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 KCNJ8Q15842 424 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 LRRC26Q2I0M4 334 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 HS3ST5Q8IZT8 346 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 ABHD11Q8NFV4 315 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 FCAMRQ8WWV6 532 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 SLC41A3Q96GZ6 507 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 FAM46AQ96IP4 442 aaKnown RBP12.44□□□□□ -0.42
PTPRF-215ENST00000496447 TEX51A0A1B0GUA7 166 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 A0A1W2PPK0 400 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 ADAM12O43184 909 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 EPHA4P54764 986 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 CTBSQ01459 385 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 TLE3Q04726 772 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 ZNF33BQ06732 778 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 ATAD3CQ5T2N8 411 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 LIPKQ5VXJ0 399 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 SLC18B1Q6NT16 456 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 FAM109AQ8N4B1 249 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 NEIL3Q8TAT5 605 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 NRG4Q8WWG1 115 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 TM9SF4Q92544 642 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 FKBP10Q96AY3 582 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 PISDQ9UG56 409 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 RNF215Q9Y6U7 377 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 AHDC1Q5TGY3 1603 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-215ENST00000496447 TRBV2A0A0J9YWF9 115 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 SLC19A2O60779 497 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 ELK4P28324 431 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 MAP2K3P46734 347 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 CTXN1P60606 82 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 TEX26Q8N6G2 289 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 SAMD12Q8N8I0 201 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 OR4K13Q8NH42 304 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 CIDECQ96AQ7 238 aaPredicted RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms