RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 J3KTA2 159 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 IFNW1P05000 195 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 HOXB3P14651 431 aaPredicted RBP10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 NPPBP16860 134 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CBLP22681 906 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 GZMKP49863 264 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CXCR4P61073 352 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 COX20Q5RI15 118 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 Q6ZSR6 202 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 KCTD20Q7Z5Y7 419 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SFTPA2Q8IWL1 248 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 GATSQ8NAP1 163 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 OR2T35Q8NGX2 323 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TEX47Q8TBZ9 253 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 RGMAQ96B86 450 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ZNF583Q96ND8 569 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 MCCC1Q96RQ3 725 aaPredicted RBP10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 NTMT1Q9BV86 223 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TTTY10Q9BZA0 68 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 AMBRA1Q9C0C7 1298 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SCPEP1Q9HB40 452 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 GTF2A1LQ9UNN4 478 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 VCANP13611 3396 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 H3BSH0 61 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 GADD45GO95257 159 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TRAPPC2P0DI81 140 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TRAPPC2BP0DI82 140 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 MPC1LP0DKB6 136 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CTHP32929 405 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TAS2R41P59536 307 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ISL1P61371 349 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ABHD18Q0P651 414 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TARDBPQ13148 414 aaKnown RBP eCLIP10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CBLBQ13191 982 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ERV3-1Q14264 604 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SLC5A12Q1EHB4 618 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 C22orf42Q6IC83 251 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ATP6V1C2Q8NEY4 427 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 C16orf78Q8WTQ4 265 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ST8SIA4Q92187 359 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 FAM3CQ92520 227 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 UBE2FQ969M7 185 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TOE1Q96GM8 510 aaKnown RBP10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CAMK1GQ96NX5 476 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 KLHL28Q9NXS3 571 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ACSL5Q9ULC5 683 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SDK2Q58EX2 2172 aa10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ARID1AO14497 2285 aa10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 NPIPA5A0A0B4J1W7 369 aa10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 LOC102723532A0A0G2JNH3 316 aa10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 NPIPA7E9PJI5 369 aa10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 FABP7O15540 132 aa10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 NPIPA8P0DM63 369 aa10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TCF3P15923 654 aa10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 C5AR1P21730 350 aa10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 FNTBP49356 437 aa10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SLC14A1Q13336 389 aa10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SP140Q13342 867 aa10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SHISA6Q6ZSJ9 500 aa10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SLC16A12Q6ZSM3 486 aa10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TP53I13Q8NBR0 393 aaPredicted RBP10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 OR8J3Q8NGG0 315 aa10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 FATE1Q969F0 183 aa10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SLC35G5Q96KT7 338 aa10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 APOOQ9BUR5 198 aa10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SLIRPQ9GZT3 109 aaKnown RBP10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 C11orf54Q9H0W9 315 aaPredicted RBP10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 KCNH6Q9H252 994 aa10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RNF167Q9H6Y7 350 aa10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 POLMQ9NP87 494 aaPredicted RBP10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 POLE3Q9NRF9 147 aa10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ENAMQ9NRM1 1142 aa10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TEX10Q9NXF1 929 aaPredicted RBP10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SLC39A1Q9NY26 324 aa10.15□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SZT2Q5T011 3432 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 FXYD6-FXYD2A0A087WZ82 144 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SSX5O60225 188 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 LDB3O75112 727 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RLN1P04808 185 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PEPDP12955 493 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 CD22P20273 847 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 OPRD1P41143 372 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 MAN2A2P49641 1150 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 DSG2Q14126 1118 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SPHARQ15513 63 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 NDUFAF6Q330K2 333 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ZNF782Q6ZMW2 699 aaPredicted RBP10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 GPR149Q86SP6 731 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 KLHDC8AQ8IYD2 350 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TOMM5Q8N4H5 51 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ANKK1Q8NFD2 765 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 OR9Q2Q8NGE9 314 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 HCAR2Q8TDS4 363 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 CREB3L1Q96BA8 519 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ZBED6CLQ96FA7 236 aaPredicted RBP10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 FXYD6Q9H0Q3 95 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 CHMP1AQ9HD42 196 aaPredicted RBP10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 EVA1BQ9NVM1 165 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TVP23BQ9NYZ1 205 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 GLS2Q9UI32 602 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms