RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 VEZF1Q14119 521 aa12.56□□□□□ -0.4
VARS-227ENST00000489979 EFR3AQ14156 821 aa12.56□□□□□ -0.4
VARS-227ENST00000489979 PON3Q15166 354 aa12.56□□□□□ -0.4
VARS-227ENST00000489979 GUSBP1Q15486 140 aa12.56□□□□□ -0.4
VARS-227ENST00000489979 CLEC12BQ2HXU8 276 aa12.56□□□□□ -0.4
VARS-227ENST00000489979 CT45A2Q5DJT8 189 aa12.56□□□□□ -0.4
VARS-227ENST00000489979 RAET1LQ5VY80 246 aa12.56□□□□□ -0.4
VARS-227ENST00000489979 FRG2Q64ET8 278 aa12.56□□□□□ -0.4
VARS-227ENST00000489979 PODNL1Q6PEZ8 512 aa12.56□□□□□ -0.4
VARS-227ENST00000489979 LARP4Q71RC2 724 aaKnown RBP eCLIP12.56□□□□□ -0.4
VARS-227ENST00000489979 METTL4Q8N3J2 472 aa12.56□□□□□ -0.4
VARS-227ENST00000489979 OR52B6Q8NGF0 335 aa12.56□□□□□ -0.4
VARS-227ENST00000489979 RNF138Q8WVD3 245 aa12.56□□□□□ -0.4
VARS-227ENST00000489979 ATP6V1E2Q96A05 226 aa12.56□□□□□ -0.4
VARS-227ENST00000489979 TM4SF18Q96CE8 201 aa12.56□□□□□ -0.4
VARS-227ENST00000489979 BTBD9Q96Q07 612 aa12.56□□□□□ -0.4
VARS-227ENST00000489979 FRG2BQ96QU4 278 aa12.56□□□□□ -0.4
VARS-227ENST00000489979 DSN1Q9H410 356 aa12.56□□□□□ -0.4
VARS-227ENST00000489979 NOL11Q9H8H0 719 aaKnown RBP12.56□□□□□ -0.4
VARS-227ENST00000489979 ANKRA2Q9H9E1 313 aa12.56□□□□□ -0.4
VARS-227ENST00000489979 CPSF2Q9P2I0 782 aaKnown RBP12.56□□□□□ -0.4
VARS-227ENST00000489979 ZNF337Q9Y3M9 751 aa12.56□□□□□ -0.4
VARS-227ENST00000489979 ZNF175Q9Y473 711 aa12.56□□□□□ -0.4
VARS-227ENST00000489979 NBEAL1Q6ZS30 2694 aa12.56□□□□□ -0.4
VARS-227ENST00000489979 GUCY1B2O75343 617 aa12.55□□□□□ -0.4
VARS-227ENST00000489979 IFNA2P01563 188 aa12.55□□□□□ -0.4
VARS-227ENST00000489979 HK1P19367 917 aa12.55□□□□□ -0.4
VARS-227ENST00000489979 IL12BP29460 328 aa12.55□□□□□ -0.4
VARS-227ENST00000489979 KRT20P35900 424 aa12.55□□□□□ -0.4
VARS-227ENST00000489979 MRPS25P82663 173 aaKnown RBP12.55□□□□□ -0.4
VARS-227ENST00000489979 FAM83EQ2M2I3 478 aa12.55□□□□□ -0.4
VARS-227ENST00000489979 SGO1Q5FBB7 561 aa12.55□□□□□ -0.4
VARS-227ENST00000489979 C10orf62Q5T681 223 aaPredicted RBP12.55□□□□□ -0.4
VARS-227ENST00000489979 TTC19Q6DKK2 380 aaPredicted RBP12.55□□□□□ -0.4
VARS-227ENST00000489979 NPSR1Q6W5P4 371 aa12.55□□□□□ -0.4
VARS-227ENST00000489979 COMMD6Q7Z4G1 85 aa12.55□□□□□ -0.4
VARS-227ENST00000489979 ZNF611Q8N823 705 aa12.55□□□□□ -0.4
VARS-227ENST00000489979 FADS6Q8N9I5 356 aa12.55□□□□□ -0.4
VARS-227ENST00000489979 OR5M1Q8NGP8 315 aa12.55□□□□□ -0.4
VARS-227ENST00000489979 TRPC4APQ8TEL6 797 aa12.55□□□□□ -0.4
VARS-227ENST00000489979 CNRIP1Q96F85 164 aaPredicted RBP12.55□□□□□ -0.4
VARS-227ENST00000489979 PLPPR2Q96GM1 343 aa12.55□□□□□ -0.4
VARS-227ENST00000489979 ZNF681Q96N22 645 aa12.55□□□□□ -0.4
VARS-227ENST00000489979 PPP4R1LQ9P1A2 415 aa12.55□□□□□ -0.4
VARS-227ENST00000489979 PSME2Q9UL46 239 aa12.55□□□□□ -0.4
VARS-227ENST00000489979 LAMP3Q9UQV4 416 aa12.55□□□□□ -0.4
VARS-227ENST00000489979 TNPO3Q9Y5L0 923 aaKnown RBP12.55□□□□□ -0.4
VARS-227ENST00000489979 ZNF780BQ9Y6R6 833 aa12.55□□□□□ -0.4
VARS-227ENST00000489979 H3BML4 177 aa12.54□□□□□ -0.4
VARS-227ENST00000489979 EIF3HO15372 352 aaKnown RBP eCLIP12.54□□□□□ -0.4
VARS-227ENST00000489979 SCO2O43819 266 aa12.54□□□□□ -0.4
VARS-227ENST00000489979 AQP8O94778 261 aa12.54□□□□□ -0.4
VARS-227ENST00000489979 TP53P04637 393 aaPredicted RBP12.54□□□□□ -0.4
VARS-227ENST00000489979 C2P06681 752 aa12.54□□□□□ -0.4
VARS-227ENST00000489979 PPP3CBP16298 524 aa12.54□□□□□ -0.4
VARS-227ENST00000489979 ALDH9A1P49189 494 aa12.54□□□□□ -0.4
VARS-227ENST00000489979 CCNG1P51959 295 aa12.54□□□□□ -0.4
VARS-227ENST00000489979 PNLIPRP2P54317 469 aa12.54□□□□□ -0.4
VARS-227ENST00000489979 CLDN20P56880 219 aa12.54□□□□□ -0.4
VARS-227ENST00000489979 GALNT1Q10472 559 aaPredicted RBP12.54□□□□□ -0.4
VARS-227ENST00000489979 IFT88Q13099 833 aa12.54□□□□□ -0.4
VARS-227ENST00000489979 ACAP2Q15057 778 aa12.54□□□□□ -0.4
VARS-227ENST00000489979 ZNF628Q5EBL2 1059 aa12.54□□□□□ -0.4
VARS-227ENST00000489979 FAM214BQ7L5A3 538 aa12.54□□□□□ -0.4
VARS-227ENST00000489979 WFDC8Q8IUA0 241 aa12.54□□□□□ -0.4
VARS-227ENST00000489979 CREG2Q8IUH2 290 aa12.54□□□□□ -0.4
VARS-227ENST00000489979 CCDC116Q8IYX3 515 aa12.54□□□□□ -0.4
VARS-227ENST00000489979 OR2M3Q8NG83 312 aa12.54□□□□□ -0.4
VARS-227ENST00000489979 TMEM158Q8WZ71 300 aa12.54□□□□□ -0.4
VARS-227ENST00000489979 AKAP1Q92667 903 aaKnown RBP eCLIP12.54□□□□□ -0.4
VARS-227ENST00000489979 EFHD2Q96C19 240 aaPredicted RBP12.54□□□□□ -0.4
VARS-227ENST00000489979 VSTM2LQ96N03 204 aa12.54□□□□□ -0.4
VARS-227ENST00000489979 TMEM204Q9BSN7 226 aa12.54□□□□□ -0.4
VARS-227ENST00000489979 REG4Q9BYZ8 158 aa12.54□□□□□ -0.4
VARS-227ENST00000489979 PFDN4Q9NQP4 134 aa12.54□□□□□ -0.4
VARS-227ENST00000489979 MED11Q9P086 117 aa12.54□□□□□ -0.4
VARS-227ENST00000489979 SLC12A4Q9UP95 1085 aa12.54□□□□□ -0.4
VARS-227ENST00000489979 UQCRHLA0A096LP55 91 aa12.53□□□□□ -0.4
VARS-227ENST00000489979 CCDC189A1A4V9 331 aa12.53□□□□□ -0.4
VARS-227ENST00000489979 OR2M5A3KFT3 312 aa12.53□□□□□ -0.4
VARS-227ENST00000489979 BCAS2O75934 225 aaPredicted RBP12.53□□□□□ -0.4
VARS-227ENST00000489979 GSTA2P09210 222 aa12.53□□□□□ -0.4
VARS-227ENST00000489979 EVI2BP34910 448 aa12.53□□□□□ -0.4
VARS-227ENST00000489979 RPS3AP61247 264 aaKnown RBP12.53□□□□□ -0.4
VARS-227ENST00000489979 RPS4XP62701 263 aaKnown RBP12.53□□□□□ -0.4
VARS-227ENST00000489979 METTL2BQ6P1Q9 378 aaKnown RBP12.53□□□□□ -0.4
VARS-227ENST00000489979 STAC2Q6ZMT1 411 aa12.53□□□□□ -0.4
VARS-227ENST00000489979 HIPK1Q86Z02 1210 aa12.53□□□□□ -0.4
VARS-227ENST00000489979 PTGR2Q8N8N7 351 aaPredicted RBP12.53□□□□□ -0.4
VARS-227ENST00000489979 OR4N2Q8NGD1 307 aa12.53□□□□□ -0.4
VARS-227ENST00000489979 OR9A2Q8NGT5 310 aa12.53□□□□□ -0.4
VARS-227ENST00000489979 ZNF675Q8TD23 568 aa12.53□□□□□ -0.4
VARS-227ENST00000489979 KAT2AQ92830 837 aa12.53□□□□□ -0.4
VARS-227ENST00000489979 FAIM2Q9BWQ8 316 aa12.53□□□□□ -0.4
VARS-227ENST00000489979 STMN4Q9H169 189 aaPredicted RBP12.53□□□□□ -0.4
VARS-227ENST00000489979 DPH5Q9H2P9 285 aa12.53□□□□□ -0.4
VARS-227ENST00000489979 FOLH1BQ9HBA9 442 aa12.53□□□□□ -0.4
VARS-227ENST00000489979 YAE1D1Q9NRH1 226 aa12.53□□□□□ -0.4
VARS-227ENST00000489979 PLSCR4Q9NRQ2 329 aa12.53□□□□□ -0.4
VARS-227ENST00000489979 FARSBQ9NSD9 589 aaKnown RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms