RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 ZNF606Q8WXB4 792 aa3.55□□□□□ -1.84
PTCD3-216ENST00000487043 SUSD6Q92537 303 aa3.55□□□□□ -1.84
PTCD3-216ENST00000487043 C18orf25Q96B23 403 aaPredicted RBP3.55□□□□□ -1.84
PTCD3-216ENST00000487043 MRPL38Q96DV4 380 aaKnown RBP3.55□□□□□ -1.84
PTCD3-216ENST00000487043 C16orf58Q96GQ5 468 aa3.55□□□□□ -1.84
PTCD3-216ENST00000487043 TSGA13Q96PP4 275 aa3.55□□□□□ -1.84
PTCD3-216ENST00000487043 ASCL2Q99929 193 aa3.55□□□□□ -1.84
PTCD3-216ENST00000487043 RAB17Q9H0T7 212 aa3.55□□□□□ -1.84
PTCD3-216ENST00000487043 DPH5Q9H2P9 285 aa3.55□□□□□ -1.84
PTCD3-216ENST00000487043 CISHQ9NSE2 258 aa3.55□□□□□ -1.84
PTCD3-216ENST00000487043 FAM212BQ9NTI7 297 aaPredicted RBP3.55□□□□□ -1.84
PTCD3-216ENST00000487043 GDAP2Q9NXN4 497 aa3.55□□□□□ -1.84
PTCD3-216ENST00000487043 TUBGCP4Q9UGJ1 667 aa3.55□□□□□ -1.84
PTCD3-216ENST00000487043 PILRAQ9UKJ1 303 aa3.55□□□□□ -1.84
PTCD3-216ENST00000487043 KIAA1257Q9ULG3 409 aa3.55□□□□□ -1.84
PTCD3-216ENST00000487043 PLA2G4CQ9UP65 541 aa3.55□□□□□ -1.84
PTCD3-216ENST00000487043 AP1M2Q9Y6Q5 423 aa3.55□□□□□ -1.84
PTCD3-216ENST00000487043 PDCD11Q14690 1871 aaKnown RBP3.54□□□□□ -1.84
PTCD3-216ENST00000487043 RALGAPA2Q2PPJ7 1873 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 CENPFP49454 3210 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 A0A087WUV0 522 aaPredicted RBP3.54□□□□□ -1.84
PTCD3-216ENST00000487043 BTNL10A8MVZ5 291 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 KIF2AO00139 706 aaPredicted RBP3.54□□□□□ -1.84
PTCD3-216ENST00000487043 ACOT8O14734 319 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 INSIG1O15503 277 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 KCNAB3O43448 404 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 KRT86O43790 486 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 FGF17O60258 216 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 CYTIPO60759 359 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 SOCS5O75159 536 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 SAP30O75446 220 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 TRMUO75648 421 aaKnown RBP3.54□□□□□ -1.84
PTCD3-216ENST00000487043 CPNE6O95741 557 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 CALCAP01258 141 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 EPOP01588 193 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 HEXBP07686 556 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 SFTPBP07988 381 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 PAEPP09466 180 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 H2AFZP0C0S5 128 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 SLC2A2P11168 524 aaPredicted RBP3.54□□□□□ -1.84
PTCD3-216ENST00000487043 FGF3P11487 239 aaPredicted RBP3.54□□□□□ -1.84
PTCD3-216ENST00000487043 PAX1P15863 534 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 ITGA3P26006 1051 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 CTNNA2P26232 953 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 MAGEA11P43364 429 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 SLC6A12P48065 614 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 NDST1P52848 882 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 OR1D5P58170 312 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 SLC26A5P58743 744 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 BTG1P62324 171 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 TNNC1P63316 161 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 ARL16Q0P5N6 197 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 INCA1Q0VD86 236 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 ILF3Q12906 894 aaKnown RBP eCLIP3.54□□□□□ -1.847e-7■■■■□ 23.9
PTCD3-216ENST00000487043 SGCGQ13326 291 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 ZNF74Q16587 644 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 DUSP5Q16690 384 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 UPP1Q16831 310 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 GTDC1Q4AE62 458 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 CLLU1OSQ5K130 101 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 CCDC122Q5T0U0 273 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 LYPLAL1Q5VWZ2 237 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 ZNF776Q68DI1 518 aaPredicted RBP3.54□□□□□ -1.84
PTCD3-216ENST00000487043 PPP1R2P3Q6NXS1 205 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 CD300LGQ6UXG3 332 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 UNC5DQ6UXZ4 953 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 SH2D5Q6ZV89 423 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 H2AFVQ71UI9 128 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 DEFB128Q7Z7B8 93 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 UNC93AQ86WB7 457 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 FAM89BQ8N5H3 189 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 RNF10Q8N5U6 811 aaKnown RBP3.54□□□□□ -1.84
PTCD3-216ENST00000487043 ARL6IP6Q8N6S5 226 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 NIPA2Q8N8Q9 360 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 CXorf58Q96LI9 332 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 C10orf90Q96M02 699 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 NECTIN4Q96NY8 510 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 CASD1Q96PB1 797 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 PCDHB18PQ96TA0 734 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 COQ7Q99807 217 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 SPAG8Q99932 426 aaPredicted RBP3.54□□□□□ -1.84
PTCD3-216ENST00000487043 ELOVL4Q9GZR5 314 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 SIRPDQ9H106 197 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 ZNF665Q9H7R5 613 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 MARCH7Q9H992 704 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 ACP6Q9NPH0 428 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 LZTFL1Q9NQ48 299 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 DDX28Q9NUL7 540 aaKnown RBP3.54□□□□□ -1.84
PTCD3-216ENST00000487043 ELF5Q9UKW6 265 aaPredicted RBP3.54□□□□□ -1.84
PTCD3-216ENST00000487043 BARX2Q9UMQ3 279 aaPredicted RBP3.54□□□□□ -1.84
PTCD3-216ENST00000487043 PLEKHA6Q9Y2H5 1048 aa3.54□□□□□ -1.84
PTCD3-216ENST00000487043 KIAA0100Q14667 2235 aaKnown RBP3.54□□□□□ -1.84
PTCD3-216ENST00000487043 DNAH12Q6ZR08 3092 aa3.53□□□□□ -1.84
PTCD3-216ENST00000487043 SCN1AP35498 2009 aa3.53□□□□□ -1.84
PTCD3-216ENST00000487043 SCN5AQ14524 2016 aa3.53□□□□□ -1.84
PTCD3-216ENST00000487043 TDRD15B5MCY1 1934 aaKnown RBP3.53□□□□□ -1.84
PTCD3-216ENST00000487043 A0A0U1RRA0 63 aa3.53□□□□□ -1.84
PTCD3-216ENST00000487043 A8MXQ7 604 aa3.53□□□□□ -1.84
PTCD3-216ENST00000487043 TMCO5BA8MYB1 307 aa3.53□□□□□ -1.84
PTCD3-216ENST00000487043 EEF2KO00418 725 aaKnown RBP3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms