RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 DLG1Q12959 904 aa11.35□□□□□ -0.59
SKA3-206ENST00000475251 IFT88Q13099 833 aa11.35□□□□□ -0.59
SKA3-206ENST00000475251 CALCOCO2Q13137 446 aa11.35□□□□□ -0.59
SKA3-206ENST00000475251 ACAP2Q15057 778 aa11.35□□□□□ -0.59
SKA3-206ENST00000475251 CLEC12BQ2HXU8 276 aa11.35□□□□□ -0.59
SKA3-206ENST00000475251 RAET1LQ5VY80 246 aa11.35□□□□□ -0.59
SKA3-206ENST00000475251 FRG2Q64ET8 278 aa11.35□□□□□ -0.59
SKA3-206ENST00000475251 C3orf62Q6ZUJ4 267 aa11.35□□□□□ -0.59
SKA3-206ENST00000475251 FAM214BQ7L5A3 538 aa11.35□□□□□ -0.59
SKA3-206ENST00000475251 CMC1Q7Z7K0 106 aa11.35□□□□□ -0.59
SKA3-206ENST00000475251 ZNF610Q8N9Z0 462 aa11.35□□□□□ -0.59
SKA3-206ENST00000475251 FIG4Q92562 907 aa11.35□□□□□ -0.59
SKA3-206ENST00000475251 NXNL1Q96CM4 212 aa11.35□□□□□ -0.59
SKA3-206ENST00000475251 BTBD9Q96Q07 612 aa11.35□□□□□ -0.59
SKA3-206ENST00000475251 FRG2BQ96QU4 278 aa11.35□□□□□ -0.59
SKA3-206ENST00000475251 PIGQQ9BRB3 760 aa11.35□□□□□ -0.59
SKA3-206ENST00000475251 PTGES2Q9H7Z7 377 aa11.35□□□□□ -0.59
SKA3-206ENST00000475251 SAYSD1Q9NPB0 183 aa11.35□□□□□ -0.59
SKA3-206ENST00000475251 SDHAF3Q9NRP4 125 aa11.35□□□□□ -0.59
SKA3-206ENST00000475251 STOML1Q9UBI4 398 aa11.35□□□□□ -0.59
SKA3-206ENST00000475251 HEY2Q9UBP5 337 aa11.35□□□□□ -0.59
SKA3-206ENST00000475251 CES1P1Q9UKY3 287 aa11.35□□□□□ -0.59
SKA3-206ENST00000475251 EMC9Q9Y3B6 208 aa11.35□□□□□ -0.59
SKA3-206ENST00000475251 MED12Q93074 2177 aa11.35□□□□□ -0.59
SKA3-206ENST00000475251 HK1P19367 917 aa11.34□□□□□ -0.59
SKA3-206ENST00000475251 TCEA1P23193 301 aaKnown RBP11.34□□□□□ -0.59
SKA3-206ENST00000475251 IDUAP35475 653 aa11.34□□□□□ -0.59
SKA3-206ENST00000475251 CCNG1P51959 295 aa11.34□□□□□ -0.59
SKA3-206ENST00000475251 KRTAP1-1Q07627 177 aa11.34□□□□□ -0.59
SKA3-206ENST00000475251 NAB1Q13506 487 aa11.34□□□□□ -0.59
SKA3-206ENST00000475251 PON3Q15166 354 aa11.34□□□□□ -0.59
SKA3-206ENST00000475251 ERCC6LQ2NKX8 1250 aa11.34□□□□□ -0.59
SKA3-206ENST00000475251 TRMT12Q53H54 448 aaKnown RBP11.34□□□□□ -0.59
SKA3-206ENST00000475251 ANKRD34AQ69YU3 496 aa11.34□□□□□ -0.59
SKA3-206ENST00000475251 OR5M10Q6IEU7 315 aa11.34□□□□□ -0.59
SKA3-206ENST00000475251 LARP4Q71RC2 724 aaKnown RBP eCLIP11.34□□□□□ -0.59
SKA3-206ENST00000475251 SAMD14Q8IZD0 417 aaPredicted RBP11.34□□□□□ -0.59
SKA3-206ENST00000475251 METTL4Q8N3J2 472 aa11.34□□□□□ -0.59
SKA3-206ENST00000475251 PPM1NQ8N819 430 aa11.34□□□□□ -0.59
SKA3-206ENST00000475251 OR6K3Q8NGY3 331 aa11.34□□□□□ -0.59
SKA3-206ENST00000475251 FNDC9Q8TBE3 224 aa11.34□□□□□ -0.59
SKA3-206ENST00000475251 ZNF675Q8TD23 568 aa11.34□□□□□ -0.59
SKA3-206ENST00000475251 MRPL1Q9BYD6 325 aaKnown RBP11.34□□□□□ -0.59
SKA3-206ENST00000475251 OR10A4Q9H209 315 aa11.34□□□□□ -0.59
SKA3-206ENST00000475251 NOL11Q9H8H0 719 aaKnown RBP11.34□□□□□ -0.59
SKA3-206ENST00000475251 NMRK1Q9NWW6 199 aa11.34□□□□□ -0.59
SKA3-206ENST00000475251 ZANQ9Y493 2812 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 ATRQ13535 2644 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 RNF223E7ERA6 249 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 SEC14L5O43304 696 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 ZSCAN12O43309 604 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 KLF4O43474 513 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 TSPAN2O60636 221 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 PLGP00747 810 aaPredicted RBP11.33□□□□□ -0.6
SKA3-206ENST00000475251 CT45A8P0DMV1 189 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 CT45A9P0DMV2 189 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 NID1P14543 1247 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 PCSK2P16519 638 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 STX2P32856 288 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 B3GALT5-AS1P59052 145 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 TRA2BP62995 288 aaKnown RBP11.33□□□□□ -0.6
SKA3-206ENST00000475251 CAPRIN1Q14444 709 aaKnown RBP11.33□□□□□ -0.6
SKA3-206ENST00000475251 SGCBQ16585 318 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 EXOC3L2Q2M3D2 409 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 CT45A2Q5DJT8 189 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 COMMD6Q7Z4G1 85 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 HIPK1Q86Z02 1210 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 PHC2Q8IXK0 858 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 RNF138Q8WVD3 245 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 KCTD4Q8WVF5 259 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 PLPPR2Q96GM1 343 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 NTMT1Q9BV86 223 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 PRRG4Q9BZD6 226 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 ELOVL6Q9H5J4 265 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 PFDN4Q9NQP4 134 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 PLSCR4Q9NRQ2 329 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 CPSF2Q9P2I0 782 aaKnown RBP11.33□□□□□ -0.6
SKA3-206ENST00000475251 TMCO1Q9UM00 188 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 ABCG2Q9UNQ0 655 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 LAMP3Q9UQV4 416 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 SNX24Q9Y343 169 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 OR10H1Q9Y4A9 318 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 AP4B1Q9Y6B7 739 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 HEATR5AQ86XA9 2040 aa11.33□□□□□ -0.6
SKA3-206ENST00000475251 H3BML4 177 aa11.32□□□□□ -0.6
SKA3-206ENST00000475251 OR7A17O14581 309 aa11.32□□□□□ -0.6
SKA3-206ENST00000475251 CD5LO43866 347 aa11.32□□□□□ -0.6
SKA3-206ENST00000475251 KLHL2O95198 593 aa11.32□□□□□ -0.6
SKA3-206ENST00000475251 THBDP07204 575 aa11.32□□□□□ -0.6
SKA3-206ENST00000475251 C8BP07358 591 aa11.32□□□□□ -0.6
SKA3-206ENST00000475251 EVI2BP34910 448 aa11.32□□□□□ -0.6
SKA3-206ENST00000475251 PAFAH1B1P43034 410 aa11.32□□□□□ -0.6
SKA3-206ENST00000475251 ALDH9A1P49189 494 aa11.32□□□□□ -0.6
SKA3-206ENST00000475251 CLK3P49761 638 aaKnown RBP11.32□□□□□ -0.6
SKA3-206ENST00000475251 SUCLG1P53597 346 aaKnown RBP11.32□□□□□ -0.6
SKA3-206ENST00000475251 GAS1P54826 345 aa11.32□□□□□ -0.6
SKA3-206ENST00000475251 CTBP2P56545 445 aa11.32□□□□□ -0.6
SKA3-206ENST00000475251 MRPS35P82673 323 aaKnown RBP11.32□□□□□ -0.6
SKA3-206ENST00000475251 GUSBP1Q15486 140 aa11.32□□□□□ -0.6
SKA3-206ENST00000475251 CHRFAM7AQ494W8 412 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 156.5 ms