RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 JUNP05412 331 aaKnown RBP17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 CYP4B1P13584 511 aa17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 GRK2P25098 689 aa17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 IL12BP29460 328 aa17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 SRD5A2P31213 254 aa17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 MC3RP41968 323 aa17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 LHX2P50458 406 aa17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 ART1P52961 327 aa17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 PNLIPRP2P54317 469 aa17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 PSG6Q00889 435 aa17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 ZNF155Q12901 538 aaPredicted RBP17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 FOXF2Q12947 444 aa17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 EFR3AQ14156 821 aa17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 OR5M10Q6IEU7 315 aa17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 PLXDC2Q6UX71 529 aa17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 SLC44A2Q8IWA5 706 aaPredicted RBP17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 TRIM42Q8IWZ5 723 aa17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 FAM222BQ8WU58 562 aa17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 BBS4Q96RK4 519 aa17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 POLDIP3Q9BY77 421 aaKnown RBP17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 STMN4Q9H169 189 aaPredicted RBP17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 CLEC4MQ9H2X3 399 aaPredicted RBP17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 C12orf65Q9H3J6 166 aaKnown RBP17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 TAS2R9Q9NYW1 312 aa17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 TAS2R7Q9NYW3 318 aa17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 FOXD3Q9UJU5 478 aaPredicted RBP17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 POLR3HQ9Y535 204 aaPredicted RBP17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 A0A087WV62 115 aa17.05■□□□□ 0.32
CCDC88B-206ENST00000473405 EEF1E1-BLOC1S5C9J1V9 151 aa17.05■□□□□ 0.32
CCDC88B-206ENST00000473405 H0Y3Z8 333 aa17.05■□□□□ 0.32
CCDC88B-206ENST00000473405 EEF1E1O43324 174 aaKnown RBP17.05■□□□□ 0.32
CCDC88B-206ENST00000473405 CD1EP15812 388 aa17.05■□□□□ 0.32
CCDC88B-206ENST00000473405 TACR1P25103 407 aa17.05■□□□□ 0.32
CCDC88B-206ENST00000473405 OPRM1P35372 400 aa17.05■□□□□ 0.32
CCDC88B-206ENST00000473405 GCKP35557 465 aa17.05■□□□□ 0.32
CCDC88B-206ENST00000473405 NCBP2P52298 156 aaKnown RBP eCLIP17.05■□□□□ 0.32
CCDC88B-206ENST00000473405 IST1P53990 364 aa17.05■□□□□ 0.32
CCDC88B-206ENST00000473405 CLDN18P56856 261 aa17.05■□□□□ 0.32
CCDC88B-206ENST00000473405 RIPPLY3P57055 190 aa17.05■□□□□ 0.32
CCDC88B-206ENST00000473405 DNAJB13P59910 316 aa17.05■□□□□ 0.32
CCDC88B-206ENST00000473405 C2orf80Q0P641 193 aa17.05■□□□□ 0.32
CCDC88B-206ENST00000473405 TMEM107Q6UX40 140 aa17.05■□□□□ 0.32
CCDC88B-206ENST00000473405 LRRC46Q96FV0 321 aa17.05■□□□□ 0.32
CCDC88B-206ENST00000473405 UCN2Q96RP3 112 aa17.05■□□□□ 0.32
CCDC88B-206ENST00000473405 MIEF1Q9NQG6 463 aa17.05■□□□□ 0.32
CCDC88B-206ENST00000473405 CLCF1Q9UBD9 225 aa17.05■□□□□ 0.32
CCDC88B-206ENST00000473405 CCL27Q9Y4X3 112 aa17.05■□□□□ 0.32
CCDC88B-206ENST00000473405 CLCA1A8K7I4 914 aa17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 UPK1AO00322 258 aa17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 COQ9O75208 318 aa17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 RSL1D1O76021 490 aaKnown RBP17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 SLITRK5O94991 958 aa17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 IL18BPO95998 194 aa17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 TMIGD3P0DMS9 266 aaPredicted RBP17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 EVI2BP34910 448 aa17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 KRT20P35900 424 aa17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 STARP49675 285 aa17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 NAA20P61599 178 aa17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 SRYQ05066 204 aa17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 IMPG1Q17R60 797 aa17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 CCDC153Q494R4 210 aa17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 NOXRED1Q6NXP6 359 aa17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 ENPP6Q6UWR7 440 aa17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 TDRPQ86YL5 185 aa17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 OR2L13Q8N349 312 aa17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 FAM76AQ8TAV0 307 aa17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 NINJ1Q92982 152 aa17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 AMDHD1Q96NU7 426 aa17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 GLIPR2Q9H4G4 154 aa17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 OXSMQ9NWU1 459 aa17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 ST6GALNAC2Q9UJ37 374 aa17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 GRID1Q9ULK0 1009 aa17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 C19orf53Q9UNZ5 99 aaPredicted RBP17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 MRPS18CQ9Y3D5 142 aaKnown RBP17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 OR10H1Q9Y4A9 318 aa17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 PTGDR2Q9Y5Y4 395 aa17.04■□□□□ 0.32
CCDC88B-206ENST00000473405 NSD1Q96L73 2696 aaPredicted RBP17.03■□□□□ 0.32
CCDC88B-206ENST00000473405 H3BQF6 201 aa17.03■□□□□ 0.32
CCDC88B-206ENST00000473405 PLOD2O00469 737 aa17.03■□□□□ 0.32
CCDC88B-206ENST00000473405 ZIC3O60481 467 aa17.03■□□□□ 0.32
CCDC88B-206ENST00000473405 ZNF708P17019 499 aa17.03■□□□□ 0.32
CCDC88B-206ENST00000473405 CRHR1P34998 444 aa17.03■□□□□ 0.32
CCDC88B-206ENST00000473405 DGKQP52824 942 aa17.03■□□□□ 0.32
CCDC88B-206ENST00000473405 B3GALT5-AS1P59052 145 aa17.03■□□□□ 0.32
CCDC88B-206ENST00000473405 SORDQ00796 357 aa17.03■□□□□ 0.32
CCDC88B-206ENST00000473405 KIAA0040Q15053 153 aa17.03■□□□□ 0.32
CCDC88B-206ENST00000473405 CLEC6AQ6EIG7 209 aa17.03■□□□□ 0.32
CCDC88B-206ENST00000473405 IKBIPQ70UQ0 350 aa17.03■□□□□ 0.32
CCDC88B-206ENST00000473405 FADS6Q8N9I5 356 aa17.03■□□□□ 0.32
CCDC88B-206ENST00000473405 EIF1ADQ8N9N8 165 aaKnown RBP17.03■□□□□ 0.32
CCDC88B-206ENST00000473405 EPS8L3Q8TE67 593 aaKnown RBP17.03■□□□□ 0.32
CCDC88B-206ENST00000473405 SFXN2Q96NB2 322 aa17.03■□□□□ 0.32
CCDC88B-206ENST00000473405 ZFP3Q96NJ6 502 aa17.03■□□□□ 0.32
CCDC88B-206ENST00000473405 TM9SF2Q99805 663 aa17.03■□□□□ 0.32
CCDC88B-206ENST00000473405 SFXN3Q9BWM7 321 aa17.03■□□□□ 0.32
CCDC88B-206ENST00000473405 RTN4RQ9BZR6 473 aa17.03■□□□□ 0.32
CCDC88B-206ENST00000473405 CXXC4Q9H2H0 198 aa17.03■□□□□ 0.32
CCDC88B-206ENST00000473405 FLRT3Q9NZU0 649 aa17.03■□□□□ 0.32
CCDC88B-206ENST00000473405 DKKL1Q9UK85 242 aa17.03■□□□□ 0.32
CCDC88B-206ENST00000473405 TUBAL3A6NHL2 446 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms