RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	PRSS53	Q2L4Q9	553 aa		10.07	□□□□□ -0.8
PTPN7-204	ENST00000462815	TCHHL1	Q5QJ38	904 aa	Predicted RBP	10.07	□□□□□ -0.8
PTPN7-204	ENST00000462815	C6orf163	Q5TEZ5	329 aa		10.07	□□□□□ -0.8
PTPN7-204	ENST00000462815	EEF1A1P5	Q5VTE0	462 aa		10.07	□□□□□ -0.8
PTPN7-204	ENST00000462815	OR5M10	Q6IEU7	315 aa		10.07	□□□□□ -0.8
PTPN7-204	ENST00000462815	AAGAB	Q6PD74	315 aa		10.07	□□□□□ -0.8
PTPN7-204	ENST00000462815	CCDC25	Q86WR0	208 aa		10.07	□□□□□ -0.8
PTPN7-204	ENST00000462815	GRAMD2A	Q8IUY3	354 aa		10.07	□□□□□ -0.8
PTPN7-204	ENST00000462815	C1orf52	Q8N6N3	182 aa	Known RBP	10.07	□□□□□ -0.8
PTPN7-204	ENST00000462815	CEP112	Q8N8E3	955 aa		10.07	□□□□□ -0.8
PTPN7-204	ENST00000462815	OR4N2	Q8NGD1	307 aa		10.07	□□□□□ -0.8
PTPN7-204	ENST00000462815	FIG4	Q92562	907 aa		10.07	□□□□□ -0.8
PTPN7-204	ENST00000462815	TMCO6	Q96DC7	493 aa		10.07	□□□□□ -0.8
PTPN7-204	ENST00000462815	ERP27	Q96DN0	273 aa		10.07	□□□□□ -0.8
PTPN7-204	ENST00000462815	SFXN2	Q96NB2	322 aa		10.07	□□□□□ -0.8
PTPN7-204	ENST00000462815	ADO	Q96SZ5	270 aa		10.07	□□□□□ -0.8
PTPN7-204	ENST00000462815	OPN3	Q9H1Y3	402 aa	Predicted RBP	10.07	□□□□□ -0.8
PTPN7-204	ENST00000462815	ACSS3	Q9H6R3	686 aa		10.07	□□□□□ -0.8
PTPN7-204	ENST00000462815	BRF2	Q9HAW0	419 aa		10.07	□□□□□ -0.8
PTPN7-204	ENST00000462815	AHSP	Q9NZD4	102 aa		10.07	□□□□□ -0.8
PTPN7-204	ENST00000462815	PRODH2	Q9UF12	536 aa		10.07	□□□□□ -0.8
PTPN7-204	ENST00000462815	NDRG3	Q9UGV2	375 aa		10.07	□□□□□ -0.8
PTPN7-204	ENST00000462815	SLC12A4	Q9UP95	1085 aa		10.07	□□□□□ -0.8
PTPN7-204	ENST00000462815	EIF3L	Q9Y262	564 aa	Known RBP	10.07	□□□□□ -0.8
PTPN7-204	ENST00000462815	CSPG4	Q6UVK1	2322 aa		10.07	□□□□□ -0.8
PTPN7-204	ENST00000462815	ANK2	Q01484	3957 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	ARHGEF9	O43307	516 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	FADS1	O60427	444 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	THBD	P07204	575 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	PAX1	P15863	534 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	CHN1	P15882	459 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	DPP4	P27487	766 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	PCSK6	P29122	969 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	TYK2	P29597	1187 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	GCK	P35557	465 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	IFT88	Q13099	833 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	SGO1	Q5FBB7	561 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	KLC3	Q6P597	504 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	ZNF550	Q7Z398	422 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	YTHDF3	Q7Z739	585 aa	Known RBP	10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	MMGT1	Q8N4V1	131 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	GBP7	Q8N8V2	638 aa	Predicted RBP	10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	NOA1	Q8NC60	698 aa	Known RBP	10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	MNS1	Q8NEH6	495 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	OR2M3	Q8NG83	312 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	OR9A2	Q8NGT5	310 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	PIGT	Q969N2	578 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	MRRF	Q96E11	262 aa	Known RBP	10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	PIK3IP1	Q96FE7	263 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	HBEGF	Q99075	208 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	GSX2	Q9BZM3	304 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	VPS11	Q9H270	941 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	ELOVL6	Q9H5J4	265 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	RNF122	Q9H9V4	155 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	FOLH1B	Q9HBA9	442 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	NINJ2	Q9NZG7	142 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	FLRT3	Q9NZU0	649 aa		10.06	□□□□□ -0.8
PTPN7-204	ENST00000462815	ESYT3	A0FGR9	886 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	SLC22A20	A6NK97	555 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815		A8MT66	165 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	CASK	O14936	926 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	SMAD7	O15105	426 aa	Known RBP	10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	EMC8	O43402	210 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	PLOD3	O60568	738 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	GUCY1B2	O75343	617 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	REM1	O75628	298 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	PSMG1	O95456	288 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	IL3	P08700	152 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	RBP1	P09455	135 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	CD8B	P10966	210 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	TSPAN8	P19075	237 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	PNLIPRP2	P54317	469 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	CDH13	P55290	713 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	DSCR4	P56555	118 aa	Predicted RBP	10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	PSG6	Q00889	435 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	TMEM44	Q2T9K0	475 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	TTC19	Q6DKK2	380 aa	Predicted RBP	10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	OR2A2	Q6IF42	318 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	SCIMP	Q6UWF3	145 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	LARP4	Q71RC2	724 aa	Known RBP eCLIP	10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	MILR1	Q7Z6M3	343 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	RELL1	Q8IUW5	271 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	P3H2	Q8IVL5	708 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	CCDC116	Q8IYX3	515 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	OR7G2	Q8NG99	324 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	SELENOM	Q8WWX9	145 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	KAT2A	Q92830	837 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	ATP6V1E2	Q96A05	226 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	PGM2	Q96G03	612 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	CCL19	Q99731	98 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	UBTD1	Q9HAC8	227 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	ELOVL5	Q9NYP7	299 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	MCM8	Q9UJA3	840 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	DKKL1	Q9UK85	242 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	UTS2R	Q9UKP6	389 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	TMCO1	Q9UM00	188 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	UTP11	Q9Y3A2	253 aa	Known RBP	10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	ZNF337	Q9Y3M9	751 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	HEATR5A	Q86XA9	2040 aa		10.05	□□□□□ -0.8
PTPN7-204	ENST00000462815	OR2M5	A3KFT3	312 aa		10.04	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms