RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 PTRH2Q9Y3E5 179 aaKnown RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 POLR3HQ9Y535 204 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 IRAK3Q9Y616 596 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 CEPT1Q9Y6K0 416 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 HSPE1-MOB4S4R3N1 261 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 LOC285556D6RIA3 1793 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 SPTBN5Q9NRC6 3674 aaKnown RBP4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 RLFQ13129 1914 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 BAZ2AQ9UIF9 1905 aaKnown RBP4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 PLXNA1Q9UIW2 1896 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 PRUNE2Q8WUY3 3088 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 PLIN4Q96Q06 1357 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 A0A0U1RQS6 177 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 FAM90A18PA6NE21 464 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 FAM90A16PA6NEW6 464 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 A6NIZ1 184 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 FAM90A9PA6NNJ1 464 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 FAM90A5PA8MXJ8 464 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 TLR4O00206 839 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 SLC33A1O00400 549 aaPredicted RBP4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 PJA2O43164 708 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 WIPF1O43516 503 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 RNASEH1O60930 286 aaKnown RBP4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 TULP3O75386 442 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 IFNA10P01566 189 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 FAM90A15PP0C7V4 464 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 FAM90A14PP0C7W9 464 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 RD3LP0DJH9 198 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 ITGAMP11215 1152 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 AREGP15514 252 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 GM2AP17900 193 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 PGM1P36871 562 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 ARL4AP40617 200 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 CASRP41180 1078 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 SUOXP51687 545 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 UCP2P55851 309 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 MLF1P58340 268 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 RPL26P61254 145 aaKnown RBP4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 RAB11AP62491 216 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 B4GALNT1Q00973 533 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 PTH1RQ03431 593 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 SLC34A1Q06495 639 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 ITGADQ13349 1161 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 ORC2Q13416 577 aaPredicted RBP4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 EIF4EBP2Q13542 120 aaPredicted RBP4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 SNTB1Q13884 538 aaKnown RBP4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 CHI3L2Q15782 390 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 RAB11BQ15907 218 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 ZBTB6Q15916 424 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 EXOC3L4Q17RC7 722 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 FAM91A1Q658Y4 838 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 LPCAT3Q6P1A2 487 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 FAM199XQ6PEV8 388 aaPredicted RBP4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 SCIMPQ6UWF3 145 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 GDPD4Q6W3E5 623 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 SPNS3Q6ZMD2 512 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 TMEM179Q6ZVK1 233 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 PIGWQ7Z7B1 504 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 RTN4RL2Q86UN3 420 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 PRSS35Q8N3Z0 413 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 BPIFB1Q8TDL5 484 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 SFT2D1Q8WV19 159 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 SNAPC3Q92966 411 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 HGDQ93099 445 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 DTD2Q96FN9 168 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 C12orf42Q96LP6 360 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 MCCC1Q96RQ3 725 aaPredicted RBP4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 TRIB1Q96RU8 372 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 ADAM2Q99965 735 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 MECRQ9BV79 373 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 ANKRD60Q9BZ19 345 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 SHARPINQ9H0F6 387 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 TRABDQ9H4I3 376 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 G6PC2Q9NQR9 355 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 FBXO8Q9NRD0 319 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 SPHK1Q9NYA1 384 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 ERAP1Q9NZ08 941 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 ONECUT1Q9UBC0 465 aa4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 GREB1LQ9C091 1923 aaPredicted RBP4.51□□□□□ -1.69
CCDC88A-209ENST00000456975 A0A0G2JNJ9 132 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 LOC102723971A0A1B0GUV8 181 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 A0A1W2PQL4 384 aaPredicted RBP4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 CENPXA8MT69 81 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 E5RJQ4 531 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 G3V2T6 193 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 I3L521 148 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 PIK3R2O00459 728 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 PAPSS1O43252 624 aaPredicted RBP4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 RNF13O43567 381 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 SLC28A2O43868 658 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 VPS26AO75436 327 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 PIGRP01833 764 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 H2AFB1P0C5Y9 115 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 ELFN1P0C7U0 828 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 CD8BP10966 210 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF250P15622 560 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 LBPP18428 481 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 DRD4P21917 467 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 CBLP22681 906 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 C21orf33P30042 268 aaPredicted RBP4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms