RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 USB1Q9BQ65 265 aaKnown RBP6.44□□□□□ -1.38
VPS41-208ENST00000448833 YIPF4Q9BSR8 244 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 EPB41L4BQ9H329 900 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 FANCFQ9NPI8 374 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 MIEF1Q9NQG6 463 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 RRAGDQ9NQL2 400 aaPredicted RBP6.44□□□□□ -1.38
VPS41-208ENST00000448833 TAS2R7Q9NYW3 318 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 JKAMPQ9P055 326 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 EIF3LQ9Y262 564 aaKnown RBP6.44□□□□□ -1.38
VPS41-208ENST00000448833 SLC6A5Q9Y345 797 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 WIF1Q9Y5W5 379 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 A0A1W2PS29 197 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 DLX3O60479 287 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 TSPAN2O60636 221 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 SOX30O94993 753 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 RAF1P04049 648 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 IL3P08700 152 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 CT45A8P0DMV1 189 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 CT45A9P0DMV2 189 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 MYL2P10916 166 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 PEPDP12955 493 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 PCSK2P16519 638 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 DDCP20711 480 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 TACR1P25103 407 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 DPP4P27487 766 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 NTSP30990 170 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 TIA1P31483 386 aaKnown RBP eCLIP6.43□□□□□ -1.38
VPS41-208ENST00000448833 GFRA1P56159 465 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 DSCR4P56555 118 aaPredicted RBP6.43□□□□□ -1.38
VPS41-208ENST00000448833 C2orf80Q0P641 193 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 KEAP1Q14145 624 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 NNATQ16517 81 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 DECR1Q16698 335 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 KRTAP21-3Q3LHN1 58 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 CCDC153Q494R4 210 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 GLYR1Q49A26 553 aaPredicted RBP6.43□□□□□ -1.38
VPS41-208ENST00000448833 VPS26BQ4G0F5 336 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 UNC50Q53HI1 259 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 CT45A2Q5DJT8 189 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 CFAP157Q5JU67 520 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 POMZP3Q6PJE2 187 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 IKBIPQ70UQ0 350 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 P4HA3Q7Z4N8 544 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 GRAMD2AQ8IUY3 354 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 SLC44A2Q8IWA5 706 aaPredicted RBP6.43□□□□□ -1.38
VPS41-208ENST00000448833 MEIOBQ8N635 442 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 EIF1ADQ8N9N8 165 aaKnown RBP6.43□□□□□ -1.38
VPS41-208ENST00000448833 WDSUB1Q8N9V3 476 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 NAXEQ8NCW5 288 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 OR4K17Q8NGC6 315 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 RDH11Q8TC12 318 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 C16orf78Q8WTQ4 265 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 SMPDL3BQ92485 455 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 EXOSC8Q96B26 276 aaKnown RBP6.43□□□□□ -1.38
VPS41-208ENST00000448833 SFXN2Q96NB2 322 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 NODALQ96S42 347 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 GPATCH1Q9BRR8 931 aaKnown RBP6.43□□□□□ -1.38
VPS41-208ENST00000448833 SLC39A3Q9BRY0 314 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 RBM24Q9BX46 236 aaKnown RBP6.43□□□□□ -1.38
VPS41-208ENST00000448833 Q9N2J8 555 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 SERHLQ9NQF3 203 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 CCM2LQ9NUG4 571 aaPredicted RBP6.43□□□□□ -1.38
VPS41-208ENST00000448833 PAQR5Q9NXK6 330 aaPredicted RBP6.43□□□□□ -1.38
VPS41-208ENST00000448833 TMEM216Q9P0N5 145 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 PPP4R1LQ9P1A2 415 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 PSMC3IPQ9P2W1 217 aaPredicted RBP6.43□□□□□ -1.38
VPS41-208ENST00000448833 MID2Q9UJV3 735 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 DKKL1Q9UK85 242 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 PACSIN3Q9UKS6 424 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 CBLCQ9ULV8 474 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 ABCG2Q9UNQ0 655 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 MAPRE3Q9UPY8 281 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 DTX4Q9Y2E6 619 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 PCNX3Q9H6A9 2034 aa6.43□□□□□ -1.38
VPS41-208ENST00000448833 SETD2Q9BYW2 2564 aaPredicted RBP6.43□□□□□ -1.38
VPS41-208ENST00000448833 KIAA1549Q9HCM3 1950 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 ABCA4P78363 2273 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 HRNRQ86YZ3 2850 aaPredicted RBP6.42□□□□□ -1.38
VPS41-208ENST00000448833 SH3D21A4FU49 640 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 CLCA1A8K7I4 914 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 MYO1GB0I1T2 1018 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 PLOD2O00469 737 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 PPP6CO00743 305 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 MSTNO14793 375 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 ARHGEF9O43307 516 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 RIPK2O43353 540 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 RGS14O43566 566 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 GLRA3O75311 464 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 TNFRSF21O75509 655 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 KCNH1O95259 989 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 HSPA4LO95757 839 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 CHEK2O96017 543 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 SBK3P0C264 359 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 FCGR2AP12318 317 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 TSPAN8P19075 237 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 KLK2P20151 261 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 GRK2P25098 689 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 LCN1P31025 176 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 PTGDSP41222 190 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 DNAJB13P59910 316 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms