RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 BMFQ96LC9 184 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 HIST1H2AAQ96QV6 131 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 ITPAQ9BY32 194 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 MCUBQ9NWR8 336 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 LAMP5Q9UJQ1 280 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 GNG8Q9UK08 70 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 NSG1A0A0A6YYJ2 146 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 A6NL46 340 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 FAM227AF5H4B4 570 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 SEC14L5O43304 696 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 MRPL3P09001 348 aaKnown RBP6.96□□□□□ -1.29
SYNE1-213ENST00000448038 COL9A1P20849 921 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 ZP2Q05996 745 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 GPR19Q15760 415 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 TSTQ16762 297 aaKnown RBP6.96□□□□□ -1.29
SYNE1-213ENST00000448038 RNASE12Q5GAN4 147 aaKnown RBP6.96□□□□□ -1.29
SYNE1-213ENST00000448038 MANEAQ5SRI9 462 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 OGFRL1Q5TC84 451 aaPredicted RBP6.96□□□□□ -1.29
SYNE1-213ENST00000448038 GARNL3Q5VVW2 1013 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 HDDC2Q7Z4H3 204 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 ADGRG5Q8IZF4 528 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 NLGN4XQ8N0W4 816 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 OR8J1Q8NGP2 316 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 OR6N2Q8NGY6 317 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 HDAC2Q92769 488 aaKnown RBP6.96□□□□□ -1.29
SYNE1-213ENST00000448038 CTRCQ99895 268 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 CPPED1Q9BRF8 314 aaPredicted RBP6.96□□□□□ -1.29
SYNE1-213ENST00000448038 FAM118AQ9NWS6 357 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 CBLCQ9ULV8 474 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 CNTRLQ7Z7A1 2325 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 SPTY2D1-AS1A0A0U1RR47 76 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 A0A1W2PPL8 197 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 GXYLT2A0PJZ3 443 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 SIGLEC6O43699 453 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 ZFAND5O76080 213 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 RAB36O95755 333 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 ECDO95905 644 aaPredicted RBP6.96□□□□□ -1.3
SYNE1-213ENST00000448038 NUDT7P0C024 238 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 CDKN2CP42773 168 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 EFR3AQ14156 821 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 USP43Q70EL4 1123 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 PEG10Q86TG7 708 aaKnown RBP6.96□□□□□ -1.3
SYNE1-213ENST00000448038 FAM86B1Q8N7N1 296 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 RNASE11Q8TAA1 199 aaKnown RBP6.96□□□□□ -1.3
SYNE1-213ENST00000448038 SGPP1Q9BX95 441 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 MRPL39Q9NYK5 338 aaKnown RBP6.96□□□□□ -1.3
SYNE1-213ENST00000448038 SLC7A7Q9UM01 511 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 ZNF638Q14966 1978 aaKnown RBP6.96□□□□□ -1.3
SYNE1-213ENST00000448038 PROM1O43490 865 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 KLK8O60259 260 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 ABCB7O75027 752 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 UBL4AP11441 157 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 ZNF20P17024 532 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 NUP62P37198 522 aaPredicted RBP6.96□□□□□ -1.3
SYNE1-213ENST00000448038 DCTP40126 519 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 TSFMP43897 325 aaKnown RBP6.96□□□□□ -1.3
SYNE1-213ENST00000448038 ST3GAL4Q11206 333 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 LTB4RQ15722 352 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 ZBED5Q49AG3 693 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 XKR7Q5GH72 579 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 C6orf141Q5SZD1 244 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 ZNF773Q6PK81 442 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 SH2D5Q6ZV89 423 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 PELI3Q8N2H9 469 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 CLEC1AQ8NC01 280 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 CHST4Q8NCG5 386 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 OR14L1PQ8NHC6 308 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 TTTY10Q9BZA0 68 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 TAS2R7Q9NYW3 318 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 TRIOBPQ9H2D6 2365 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 APOL3O95236 402 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 TSPAN12O95859 305 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 OR12D2P58182 307 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 PPP2R2BQ00005 443 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 RASGEF1BQ0VAM2 473 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 KLHL26Q53HC5 615 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 ATG14Q6ZNE5 492 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 MAMDC2Q7Z304 686 aaPredicted RBP6.96□□□□□ -1.3
SYNE1-213ENST00000448038 MARCH9Q86YJ5 346 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 TP53I13Q8NBR0 393 aaPredicted RBP6.96□□□□□ -1.3
SYNE1-213ENST00000448038 OR9Q2Q8NGE9 314 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 DNAJA4Q8WW22 397 aaPredicted RBP6.96□□□□□ -1.3
SYNE1-213ENST00000448038 C11orf24Q96F05 449 aaPredicted RBP6.96□□□□□ -1.3
SYNE1-213ENST00000448038 KCTD7Q96MP8 289 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 TMED9Q9BVK6 235 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 C1QTNF3Q9BXJ4 246 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 NMNAT1Q9HAN9 279 aaPredicted RBP6.96□□□□□ -1.3
SYNE1-213ENST00000448038 SRA1Q9HD15 236 aaKnown RBP6.96□□□□□ -1.3
SYNE1-213ENST00000448038 FANCFQ9NPI8 374 aa6.96□□□□□ -1.3
SYNE1-213ENST00000448038 ATXN7L1Q9ULK2 861 aaPredicted RBP6.96□□□□□ -1.3
SYNE1-213ENST00000448038 PDCD5O14737 125 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 ZNF749O43361 778 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 MITFO75030 526 aaPredicted RBP6.95□□□□□ -1.3
SYNE1-213ENST00000448038 ITGA10O75578 1167 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 ARAFP10398 606 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 SLC6A8P48029 635 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 HOXC5Q00444 222 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 MICAQ29983 383 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 IDNKQ5T6J7 187 aa6.95□□□□□ -1.3
SYNE1-213ENST00000448038 OR14A16Q8NHC5 309 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms