RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 LCA5Q86VQ0 697 aa4.88□□□□□ -1.63
USP54-206ENST00000433394 OR4F17Q8NGA8 305 aa4.88□□□□□ -1.63
USP54-206ENST00000433394 UPRTQ96BW1 309 aa4.88□□□□□ -1.63
USP54-206ENST00000433394 SDSLQ96GA7 329 aa4.88□□□□□ -1.63
USP54-206ENST00000433394 OR4F4Q96R69 305 aa4.88□□□□□ -1.63
USP54-206ENST00000433394 TXN2Q99757 166 aa4.88□□□□□ -1.63
USP54-206ENST00000433394 MRPL13Q9BYD1 178 aaKnown RBP4.88□□□□□ -1.63
USP54-206ENST00000433394 AMBNQ9NP70 447 aa4.88□□□□□ -1.63
USP54-206ENST00000433394 GALPQ9UBC7 116 aa4.88□□□□□ -1.63
USP54-206ENST00000433394 SF3B1O75533 1304 aaKnown RBP eCLIP4.88□□□□□ -1.638e-6■■■■■ 107
USP54-206ENST00000433394 MRC2Q9UBG0 1479 aa4.88□□□□□ -1.63
USP54-206ENST00000433394 CUX1P39880 1505 aa4.87□□□□□ -1.63
USP54-206ENST00000433394 FOXI3A8MTJ6 420 aaPredicted RBP4.87□□□□□ -1.63
USP54-206ENST00000433394 GPR89AB7ZAQ6 455 aa4.87□□□□□ -1.63
USP54-206ENST00000433394 MAGEB3O15480 346 aa4.87□□□□□ -1.63
USP54-206ENST00000433394 LANCL1O43813 399 aa4.87□□□□□ -1.63
USP54-206ENST00000433394 TYROBPO43914 113 aa4.87□□□□□ -1.63
USP54-206ENST00000433394 SDC3O75056 442 aa4.87□□□□□ -1.63
USP54-206ENST00000433394 CCDC159P0C7I6 412 aa4.87□□□□□ -1.63
USP54-206ENST00000433394 GPR89BP0CG08 455 aa4.87□□□□□ -1.63
USP54-206ENST00000433394 ATP6V1C1P21283 382 aa4.87□□□□□ -1.63
USP54-206ENST00000433394 HNRNPA2B1P22626 353 aaKnown RBP4.87□□□□□ -1.63
USP54-206ENST00000433394 DLSTP36957 453 aa4.87□□□□□ -1.63
USP54-206ENST00000433394 STK19P49842 368 aaPredicted RBP4.87□□□□□ -1.63
USP54-206ENST00000433394 ARHGDIAP52565 204 aa4.87□□□□□ -1.63
USP54-206ENST00000433394 CRMP1Q14194 572 aa4.87□□□□□ -1.63
USP54-206ENST00000433394 RAB35Q15286 201 aa4.87□□□□□ -1.63
USP54-206ENST00000433394 TMEM44Q2T9K0 475 aa4.87□□□□□ -1.63
USP54-206ENST00000433394 NADK2Q4G0N4 442 aa4.87□□□□□ -1.63
USP54-206ENST00000433394 CFAP157Q5JU67 520 aa4.87□□□□□ -1.63
USP54-206ENST00000433394 CBLN3Q6UW01 205 aa4.87□□□□□ -1.63
USP54-206ENST00000433394 NFAM1Q8NET5 270 aaPredicted RBP4.87□□□□□ -1.63
USP54-206ENST00000433394 OR5AU1Q8NGC0 362 aa4.87□□□□□ -1.63
USP54-206ENST00000433394 FBXO30Q8TB52 745 aa4.87□□□□□ -1.63
USP54-206ENST00000433394 ART4Q93070 314 aa4.87□□□□□ -1.63
USP54-206ENST00000433394 ST6GALNAC5Q9BVH7 336 aa4.87□□□□□ -1.63
USP54-206ENST00000433394 RBM28Q9NW13 759 aaKnown RBP4.87□□□□□ -1.63
USP54-206ENST00000433394 C6orf203Q9P0P8 240 aaPredicted RBP4.87□□□□□ -1.63
USP54-206ENST00000433394 ASIC3Q9UHC3 531 aa4.87□□□□□ -1.63
USP54-206ENST00000433394 SALL1Q9NSC2 1324 aa4.87□□□□□ -1.63
USP54-206ENST00000433394 WDR62O43379 1518 aa4.87□□□□□ -1.63
USP54-206ENST00000433394 TOPBP1Q92547 1522 aa4.87□□□□□ -1.63
USP54-206ENST00000433394 KIF21AQ7Z4S6 1674 aa4.86□□□□□ -1.63
USP54-206ENST00000433394 TRIM49BA6NDI0 452 aa4.86□□□□□ -1.63
USP54-206ENST00000433394 LRRC30A6NM36 301 aa4.86□□□□□ -1.63
USP54-206ENST00000433394 H2AFZP0C0S5 128 aa4.86□□□□□ -1.63
USP54-206ENST00000433394 OTX2P32243 289 aa4.86□□□□□ -1.63
USP54-206ENST00000433394 PDK4Q16654 411 aa4.86□□□□□ -1.63
USP54-206ENST00000433394 C14orf28Q4W4Y0 310 aa4.86□□□□□ -1.63
USP54-206ENST00000433394 NCR3LG1Q68D85 454 aa4.86□□□□□ -1.63
USP54-206ENST00000433394 SLC39A4Q6P5W5 647 aa4.86□□□□□ -1.63
USP54-206ENST00000433394 ZNRF1Q8ND25 227 aa4.86□□□□□ -1.63
USP54-206ENST00000433394 SSC4DQ8WTU2 575 aa4.86□□□□□ -1.63
USP54-206ENST00000433394 FEM1AQ9BSK4 669 aa4.86□□□□□ -1.63
USP54-206ENST00000433394 TBC1D10AQ9BXI6 508 aa4.86□□□□□ -1.63
USP54-206ENST00000433394 DHX33Q9H6R0 707 aaKnown RBP4.86□□□□□ -1.63
USP54-206ENST00000433394 RMND5AQ9H871 391 aa4.86□□□□□ -1.63
USP54-206ENST00000433394 MBD2Q9UBB5 411 aa4.86□□□□□ -1.63
USP54-206ENST00000433394 ZNF346Q9UL40 294 aaKnown RBP4.86□□□□□ -1.63
USP54-206ENST00000433394 DUSP12Q9UNI6 340 aa4.86□□□□□ -1.63
USP54-206ENST00000433394 EXOSC1Q9Y3B2 195 aaKnown RBP4.86□□□□□ -1.63
USP54-206ENST00000433394 OR10H1Q9Y4A9 318 aa4.86□□□□□ -1.63
USP54-206ENST00000433394 PRSS21Q9Y6M0 314 aa4.86□□□□□ -1.63
USP54-206ENST00000433394 KIF27Q86VH2 1401 aa4.86□□□□□ -1.63
USP54-206ENST00000433394 ERCC6Q03468 1493 aa4.86□□□□□ -1.63
USP54-206ENST00000433394 ABCA10Q8WWZ4 1543 aa4.86□□□□□ -1.63
USP54-206ENST00000433394 NESP48681 1621 aa4.86□□□□□ -1.63
USP54-206ENST00000433394 NOTCH4Q99466 2003 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 IGHV3OR16-10A0A075B7F0 116 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 IGKV3D-15A0A087WSY6 115 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 PPIAL4CA0A0B4J2A2 164 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 STX11O75558 287 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 KIAA0754O94854 1291 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 TOXO94900 526 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 IGFBP1P08833 259 aaPredicted RBP4.85□□□□□ -1.63
USP54-206ENST00000433394 HOXB7P09629 217 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 PPIAL4GP0DN37 164 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 ANXA3P12429 323 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 CYLC1P35663 651 aaPredicted RBP4.85□□□□□ -1.63
USP54-206ENST00000433394 CHI3L1P36222 383 aaPredicted RBP4.85□□□□□ -1.63
USP54-206ENST00000433394 HAND2P61296 217 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 BDH1Q02338 343 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 PAX8Q06710 450 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 SNTB2Q13425 540 aaKnown RBP4.85□□□□□ -1.63
USP54-206ENST00000433394 TFDP1Q14186 410 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 UBE2V2Q15819 145 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 CDKN3Q16667 212 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 ZNF506Q5JVG8 444 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 MEDAGQ5VYS4 303 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 ASPHD2Q6ICH7 369 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 PNCKQ6P2M8 343 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 BTNL3Q6UXE8 466 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 ZNF841Q6ZN19 808 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 LHFPL4Q7Z7J7 247 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 TBC1D21Q8IYX1 336 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 RFESDQ8TAC1 157 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 PNPT1Q8TCS8 783 aaKnown RBP4.85□□□□□ -1.63
USP54-206ENST00000433394 NAF1Q96HR8 494 aaKnown RBP4.85□□□□□ -1.63
USP54-206ENST00000433394 TTC25Q96NG3 672 aa4.85□□□□□ -1.63
USP54-206ENST00000433394 RBM4BQ9BQ04 359 aaKnown RBP4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms