RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 CORO2AQ92828 525 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 SH3BGRL2Q9UJC5 107 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 SC5DO75845 299 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 HTR3BO95264 441 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 SERPINA7P05543 415 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 DEFA4P12838 97 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 ETFAP13804 333 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 EEF1A2Q05639 463 aaKnown RBP6.52□□□□□ -1.37
SCN1A-204ENST00000423058 KCNJ8Q15842 424 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 LEG1Q6P5S2 330 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 NXPE4Q6UWF7 544 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 OR52E2Q8NGJ4 325 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 ESAMQ96AP7 390 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 RSPRY1Q96DX4 576 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 NKX2-4Q9H2Z4 354 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 SEMA6CQ9H3T2 930 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 CWH43Q9H720 699 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 LMAN1LQ9HAT1 526 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 CD93Q9NPY3 652 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 GPATCH2Q9NW75 528 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 KIF25Q9UIL4 384 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 LHX6Q9UPM6 363 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 CENPBD1B2RD01 187 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 PAHP00439 452 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 H2AFB2P0C5Z0 115 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 IQCF3P0C7M6 154 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 GDF1P27539 372 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 PITPNBP48739 271 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 AQP4P55087 323 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 EEF1A1P68104 462 aaKnown RBP6.52□□□□□ -1.37
SCN1A-204ENST00000423058 NPRL3Q12980 569 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 HNRNPA0Q13151 305 aaKnown RBP6.52□□□□□ -1.37
SCN1A-204ENST00000423058 ZBTB8BQ8NAP8 495 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-204ENST00000423058 TFAP2BQ92481 460 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 SENP5Q96HI0 755 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-204ENST00000423058 ERVK-19Q9WJR5 959 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 NKX6-3A6NJ46 265 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 TOR1BO14657 336 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 FCER2P06734 321 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 CHRM1P11229 460 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-204ENST00000423058 G6PDP11413 515 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 RAB3AP20336 220 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 CSNK1A1P48729 337 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 UPP1Q16831 310 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 PLCXD3Q63HM9 321 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 LARP4Q71RC2 724 aaKnown RBP eCLIP6.52□□□□□ -1.37
SCN1A-204ENST00000423058 CSNK2A3Q8NEV1 391 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 MS4A4EQ96PG1 132 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 MINDY3Q9H8M7 445 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 ACSL6Q9UKU0 697 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 RGPD5Q99666 1765 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 A0A0J9YY10 115 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 CRYZL1O95825 349 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 RABGGTBP53611 331 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 RAB5BP61020 215 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 UFM1P61960 85 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 C2orf76Q3KRA6 126 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 ANKRD22Q5VYY1 191 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 FIGLAQ6QHK4 219 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 RBMS3Q6XE24 437 aaKnown RBP6.52□□□□□ -1.37
SCN1A-204ENST00000423058 L3MBTL4Q8NA19 623 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 TIMD4Q96H15 378 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 MSLNLQ96KJ4 702 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 GPR22Q99680 433 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 CLSTN3Q9BQT9 956 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 ULBP3Q9BZM4 244 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 MTG2Q9H4K7 406 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 RNF186Q9NXI6 227 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 GABRR3A8MPY1 467 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 H3BML4 177 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 I3L521 148 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 PMM2O15305 246 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 TIMM8AO60220 97 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-204ENST00000423058 PEX10O60683 326 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 LCKP06239 509 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 MAGEA6P43360 314 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 VASPP50552 380 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-204ENST00000423058 EMP2P54851 167 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 CASP7P55210 303 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 RHDQ02161 417 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 GALNT2Q10471 571 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 GK3PQ14409 553 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 STEAP4Q687X5 459 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF767PQ75MW2 155 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 HLA-CQ95604 372 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 APMAPQ9HDC9 416 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 AGPAT4Q9NRZ5 378 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 GALPQ9UBC7 116 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 OTOFQ9HC10 1997 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 KIR2DS5A0A0G2JLQ3 304 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 A0A0G2JNG1 304 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 CD300LBA8K4G0 201 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 TRAPPC2LH3BP13 241 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 KIR2DS3K7RE56 304 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 ENSAO43768 121 aaKnown RBP6.51□□□□□ -1.37
SCN1A-204ENST00000423058 ZFAND5O76080 213 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 FABP1P07148 127 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 C7P10643 843 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 BMPR1AP36894 532 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 HK3P52790 923 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms