RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 ADAM21Q9UKJ8 722 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 FIS1Q9Y3D6 152 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 ASB4Q9Y574 426 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 WIF1Q9Y5W5 379 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 PRR14LQ5THK1 2151 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 SONP18583 2426 aaKnown RBP11.75□□□□□ -0.53
LINC00339-202ENST00000416769 A0A0A6YYD5 115 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 MBD3L4A6NDZ8 208 aaPredicted RBP11.75□□□□□ -0.53
LINC00339-202ENST00000416769 MBD3L3A6NE82 208 aaPredicted RBP11.75□□□□□ -0.53
LINC00339-202ENST00000416769 MBD3L5A6NJ08 208 aaPredicted RBP11.75□□□□□ -0.53
LINC00339-202ENST00000416769 C17orf51A8MQB3 221 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 TMEM233B4DJY2 109 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 FAM47E-STBD1D6RA91 191 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 SLC28A1O00337 649 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 PGRMC2O15173 223 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 HDAC3O15379 428 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 OR10H2O60403 315 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 IL2RAP01589 272 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 HPNP05981 417 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 VIMP08670 466 aaKnown RBP11.75□□□□□ -0.53
LINC00339-202ENST00000416769 KITP10721 976 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 ADSLP30566 484 aaPredicted RBP11.75□□□□□ -0.53
LINC00339-202ENST00000416769 LSP1P33241 339 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 BSGP35613 385 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 ARFIP1P53367 373 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 GNGT1P63211 74 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 CSTF3Q12996 717 aaKnown RBP11.75□□□□□ -0.53
LINC00339-202ENST00000416769 CUL3Q13618 768 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 RPS6KA2Q15349 733 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 TOMM20Q15388 145 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 SPRED3Q2MJR0 410 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 TMEM35AQ53FP2 167 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 SGO1Q5FBB7 561 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 TCHHL1Q5QJ38 904 aaPredicted RBP11.75□□□□□ -0.53
LINC00339-202ENST00000416769 MRM1Q6IN84 353 aaKnown RBP11.75□□□□□ -0.53
LINC00339-202ENST00000416769 SLC29A4Q7RTT9 530 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 CAMKMTQ7Z624 323 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 WDR75Q8IWA0 830 aaKnown RBP11.75□□□□□ -0.53
LINC00339-202ENST00000416769 LRRC34Q8IZ02 419 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 ST13P4Q8IZP2 240 aaPredicted RBP11.75□□□□□ -0.53
LINC00339-202ENST00000416769 GCNT2Q8N0V5 402 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 SLC15A4Q8N697 577 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 MBD3L2Q8NHZ7 208 aaPredicted RBP11.75□□□□□ -0.53
LINC00339-202ENST00000416769 AGR3Q8TD06 166 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 TWIST2Q8WVJ9 160 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 RIT1Q92963 219 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 CHMP6Q96FZ7 201 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 SERPINI1Q99574 410 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 TUBA1CQ9BQE3 449 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 PIGQQ9BRB3 760 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 G6PC3Q9BUM1 346 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 ROGDIQ9GZN7 287 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 TUBB1Q9H4B7 451 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 GALNT9Q9HCQ5 603 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 QPCTLQ9NXS2 382 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 GALNT8Q9NY28 637 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 EHD3Q9NZN3 535 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 ZNF629Q9UEG4 869 aaPredicted RBP11.75□□□□□ -0.53
LINC00339-202ENST00000416769 PCDHGB3Q9Y5G1 929 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 SPACA6W5XKT8 324 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 USF3Q68DE3 2245 aa11.75□□□□□ -0.53
LINC00339-202ENST00000416769 HEATR5AQ86XA9 2040 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 C2orf92A0A1B0GVN3 265 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 GMNCA6NCL1 334 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 TRPC5OSA6NMA1 111 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 NPIPB8E9PQR5 432 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 ZNF195O14628 629 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 NME6O75414 186 aaPredicted RBP11.74□□□□□ -0.53
LINC00339-202ENST00000416769 GPR75O95800 540 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 NR2F6P10588 404 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 TCEA1P23193 301 aaKnown RBP11.74□□□□□ -0.53
LINC00339-202ENST00000416769 CTSSP25774 331 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 PCSK6P29122 969 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 PTPN6P29350 595 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 PTGDSP41222 190 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 CASP3P42574 277 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 MASP1P48740 699 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 STARP49675 285 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 HTR6P50406 440 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 RAP1GDS1P52306 607 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 NKX6-1P78426 367 aaPredicted RBP11.74□□□□□ -0.53
LINC00339-202ENST00000416769 SRYQ05066 204 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 BTKQ06187 659 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 SCIMPQ6UWF3 145 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 Q6ZSR9 355 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 SRFBP1Q8NEF9 429 aaKnown RBP11.74□□□□□ -0.53
LINC00339-202ENST00000416769 FAM83FQ8NEG4 500 aaPredicted RBP11.74□□□□□ -0.53
LINC00339-202ENST00000416769 ADIPOR1Q96A54 375 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 NTNG2Q96CW9 530 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 HSPBAP1Q96EW2 488 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 METTL2AQ96IZ6 378 aaKnown RBP11.74□□□□□ -0.53
LINC00339-202ENST00000416769 NODALQ96S42 347 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 YIPF4Q9BSR8 244 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 ANGPTL4Q9BY76 406 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 AHSPQ9NZD4 102 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 C6orf203Q9P0P8 240 aaPredicted RBP11.74□□□□□ -0.53
LINC00339-202ENST00000416769 VPS29Q9UBQ0 182 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 NPFFR2Q9Y5X5 522 aa11.74□□□□□ -0.53
LINC00339-202ENST00000416769 ANK3Q12955 4377 aaKnown RBP11.73□□□□□ -0.53
LINC00339-202ENST00000416769 ANKRD33BA6NCL7 494 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms