RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 DMRTC2Q8IXT2 367 aaPredicted RBP9.51□□□□□ -0.89
NEDD8-202ENST00000396828 KRTCAP2Q8N6L1 136 aa9.51□□□□□ -0.89
NEDD8-202ENST00000396828 POU5F2Q8N7G0 328 aa9.51□□□□□ -0.89
NEDD8-202ENST00000396828 PCYOX1LQ8NBM8 494 aa9.51□□□□□ -0.89
NEDD8-202ENST00000396828 MORN4Q8NDC4 146 aa9.51□□□□□ -0.89
NEDD8-202ENST00000396828 ZNF721Q8TF20 911 aa9.51□□□□□ -0.89
NEDD8-202ENST00000396828 RND1Q92730 232 aa9.51□□□□□ -0.89
NEDD8-202ENST00000396828 UCN3Q969E3 161 aa9.51□□□□□ -0.89
NEDD8-202ENST00000396828 GFM2Q969S9 779 aaKnown RBP9.51□□□□□ -0.89
NEDD8-202ENST00000396828 TESCQ96BS2 214 aa9.51□□□□□ -0.89
NEDD8-202ENST00000396828 MTERF3Q96E29 417 aa9.51□□□□□ -0.89
NEDD8-202ENST00000396828 SPDL1Q96EA4 605 aa9.51□□□□□ -0.89
NEDD8-202ENST00000396828 EGLN2Q96KS0 407 aa9.51□□□□□ -0.89
NEDD8-202ENST00000396828 TEX37Q96LM6 180 aa9.51□□□□□ -0.89
NEDD8-202ENST00000396828 REEP4Q9H6H4 257 aa9.51□□□□□ -0.89
NEDD8-202ENST00000396828 EFCAB1Q9HAE3 211 aa9.51□□□□□ -0.89
NEDD8-202ENST00000396828 KCNJ16Q9NPI9 418 aa9.51□□□□□ -0.89
NEDD8-202ENST00000396828 MIEF1Q9NQG6 463 aa9.51□□□□□ -0.89
NEDD8-202ENST00000396828 ATAD3AQ9NVI7 634 aa9.51□□□□□ -0.89
NEDD8-202ENST00000396828 MS4A12Q9NXJ0 267 aa9.51□□□□□ -0.89
NEDD8-202ENST00000396828 NDE1Q9NXR1 346 aa9.51□□□□□ -0.89
NEDD8-202ENST00000396828 TUBA8Q9NY65 449 aaPredicted RBP9.51□□□□□ -0.89
NEDD8-202ENST00000396828 SPRR3Q9UBC9 169 aa9.51□□□□□ -0.89
NEDD8-202ENST00000396828 PHF11Q9UIL8 331 aa9.51□□□□□ -0.89
NEDD8-202ENST00000396828 A0A0G2JNJ9 132 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 A0A1W2PP18 115 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 KDM4EB2RXH2 506 aaPredicted RBP9.5□□□□□ -0.89
NEDD8-202ENST00000396828 SCAMP2O15127 329 aaKnown RBP9.5□□□□□ -0.89
NEDD8-202ENST00000396828 TMPRSS11DO60235 418 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 FGF17O60258 216 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 NADKO95544 446 aaPredicted RBP9.5□□□□□ -0.89
NEDD8-202ENST00000396828 IGHG3P01860 377 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 PGRP06401 933 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 IL3P08700 152 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 HOXD4P09016 255 aaPredicted RBP9.5□□□□□ -0.89
NEDD8-202ENST00000396828 RFPL3SP0C7P2 107 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 DRD2P14416 443 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 TNNI3P19429 210 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 ENDOUP21128 410 aaKnown RBP9.5□□□□□ -0.89
NEDD8-202ENST00000396828 CNR1P21554 472 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 ACVR2AP27037 513 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 TLX1P31314 330 aaPredicted RBP9.5□□□□□ -0.89
NEDD8-202ENST00000396828 BUD31P41223 144 aaPredicted RBP9.5□□□□□ -0.89
NEDD8-202ENST00000396828 ALDH9A1P49189 494 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 LRRC74AQ0VAA2 488 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 PGS1Q32NB8 556 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 FAM174BQ3ZCQ3 159 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 VPS26BQ4G0F5 336 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 TIGD2Q4W5G0 525 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 COQ5Q5HYK3 327 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 CPTPQ5TA50 214 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 C18orf63Q68DL7 685 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 TMEM211Q6ICI0 200 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 FAM71E1Q6IPT2 247 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 LYPD8Q6UX82 237 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 RTL4Q6ZR62 310 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 GPR180Q86V85 440 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 FUNDC1Q8IVP5 155 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 RIMKLAQ8IXN7 391 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 C9orf40Q8IXQ3 194 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 GPALPP1Q8IXQ4 340 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 EID3Q8N140 333 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 NATD1Q8N6N6 113 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 VPS37AQ8NEZ2 397 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 OR5M3Q8NGP4 307 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 OR14A16Q8NHC5 309 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.5□□□□□ -0.89
NEDD8-202ENST00000396828 ASB5Q8WWX0 329 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 DAZLQ92904 295 aaKnown RBP9.5□□□□□ -0.89
NEDD8-202ENST00000396828 PPCDCQ96CD2 204 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 TM4SF18Q96CE8 201 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 OR52E6Q96RD3 313 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 TTYH2Q9BSA4 534 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 LIME1Q9H400 295 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 RMND5AQ9H871 391 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 WDR41Q9HAD4 459 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 PROK2Q9HC23 129 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 LYRM4Q9HD34 91 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 SH2D2AQ9NP31 389 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 Q9UFV3 132 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 LEF1Q9UJU2 399 aaPredicted RBP9.5□□□□□ -0.89
NEDD8-202ENST00000396828 MRPS33Q9Y291 106 aaKnown RBP9.5□□□□□ -0.89
NEDD8-202ENST00000396828 ATG4BQ9Y4P1 393 aa9.5□□□□□ -0.89
NEDD8-202ENST00000396828 PRRC2AP48634 2157 aaKnown RBP9.5□□□□□ -0.89
NEDD8-202ENST00000396828 NINQ8N4C6 2090 aa9.49□□□□□ -0.89
NEDD8-202ENST00000396828 FREM3P0C091 2139 aa9.49□□□□□ -0.89
NEDD8-202ENST00000396828 ACANP16112 2415 aa9.49□□□□□ -0.89
NEDD8-202ENST00000396828 A0A1B0GVC2 190 aa9.49□□□□□ -0.89
NEDD8-202ENST00000396828 C1orf226A1L170 272 aa9.49□□□□□ -0.89
NEDD8-202ENST00000396828 B2RBV5 119 aa9.49□□□□□ -0.89
NEDD8-202ENST00000396828 C9JVG2 144 aa9.49□□□□□ -0.89
NEDD8-202ENST00000396828 MRASO14807 208 aa9.49□□□□□ -0.89
NEDD8-202ENST00000396828 AIM2O14862 343 aa9.49□□□□□ -0.89
NEDD8-202ENST00000396828 IGKV3-11P04433 115 aa9.49□□□□□ -0.89
NEDD8-202ENST00000396828 KRT16P08779 473 aa9.49□□□□□ -0.89
NEDD8-202ENST00000396828 T-ENOLP0DO92 83 aa9.49□□□□□ -0.89
NEDD8-202ENST00000396828 DDCP20711 480 aa9.49□□□□□ -0.89
NEDD8-202ENST00000396828 CPN2P22792 545 aa9.49□□□□□ -0.89
NEDD8-202ENST00000396828 IL12AP29459 219 aa9.49□□□□□ -0.89
NEDD8-202ENST00000396828 CPA2P48052 419 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms