RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 LANCL3Q6ZV70 420 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 LRRN4Q8WUT4 740 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 ZBTB20Q9HC78 741 aaPredicted RBP12.8□□□□□ -0.36
USP49-203ENST00000394253 CPNE7Q9UBL6 633 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 A0A1W2PPK0 400 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 ENPP3O14638 875 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 KLF11O14901 512 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 CT45A6P0DMU7 189 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 CT45A5P0DMU8 189 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 CT45A7P0DMV0 189 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 CT45A8P0DMV1 189 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 CT45A9P0DMV2 189 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 USF1P22415 310 aaPredicted RBP12.8□□□□□ -0.36
USP49-203ENST00000394253 GIPRP48546 466 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 EMX2Q04743 252 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 CT45A2Q5DJT8 189 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 CT45A1Q5HYN5 189 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 ZNF852Q6ZMS4 543 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 SLC7A5P1Q8MH63 180 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 BOLLQ8N9W6 283 aaKnown RBP12.8□□□□□ -0.36
USP49-203ENST00000394253 CT45A3Q8NHU0 189 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 CYP2W1Q8TAV3 490 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 CNIH3Q8TBE1 160 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 FRS2Q8WU20 508 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 REEP6Q96HR9 211 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 CMSS1Q9BQ75 279 aaKnown RBP12.8□□□□□ -0.36
USP49-203ENST00000394253 KLHL42Q9P2K6 505 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 EVLQ9UI08 416 aaPredicted RBP12.8□□□□□ -0.36
USP49-203ENST00000394253 NWD1Q149M9 1564 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 JUPP14923 745 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 ARSBP15848 533 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 TATDN3Q17R31 274 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 ARHGAP40Q5TG30 622 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 SYT13Q7L8C5 426 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 OR9A2Q8NGT5 310 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 HAPLN3Q96S86 360 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 ALG12Q9BV10 488 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 SAP130Q9H0E3 1048 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 MRPS17Q9Y2R5 130 aaKnown RBP12.8□□□□□ -0.36
USP49-203ENST00000394253 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.8□□□□□ -0.36
USP49-203ENST00000394253 PNMTP11086 282 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 GLUD2P49448 558 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 PPT1P50897 306 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 TAS2R19P59542 299 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 NFATC3Q12968 1075 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 SGCAQ16586 387 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 TMEM74Q96NL1 305 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 NUDT9Q9BW91 350 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 SARDHQ9UL12 918 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 COPS3Q9UNS2 423 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 MAP2K4P45985 399 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 GPR50Q13585 617 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 BRAT1Q6PJG6 821 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 GPR155Q7Z3F1 870 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 NPAS4Q8IUM7 802 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 ZNF100Q8IYN0 542 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 LRR1Q96L50 414 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 MUS81Q96NY9 551 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 CCM2Q9BSQ5 444 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 AOC2O75106 756 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 STT3AP46977 705 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 INTS5Q6P9B9 1019 aaKnown RBP12.79□□□□□ -0.36
USP49-203ENST00000394253 PRSS58Q8IYP2 241 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 OR2T27Q8NH04 317 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 SDCBP2Q9H190 292 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 CCM2LQ9NUG4 571 aaPredicted RBP12.79□□□□□ -0.36
USP49-203ENST00000394253 A0A1W2PQH9 124 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 VSTM2BA6NLU5 285 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 ZNF587BE7ETH6 402 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 MYF6P23409 242 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 ATP4BP51164 291 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 ZNF33BQ06732 778 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 MEX3BQ6ZN04 569 aaKnown RBP12.79□□□□□ -0.36
USP49-203ENST00000394253 HORMAD2Q8N7B1 307 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 TTTY10Q9BZA0 68 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 ASTN1O14525 1302 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 JRKO75564 520 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 SPATA31D3P0C874 917 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 KCNC3Q14003 757 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 HNF4GQ14541 408 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 PAGE3Q5JUK9 113 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 SPATA31D4Q6ZUB0 917 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 LARP4Q71RC2 724 aaKnown RBP eCLIP12.79□□□□□ -0.369e-6■■■■■ 29.6
USP49-203ENST00000394253 C11orf98E9PRG8 122 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 WNT9AO14904 365 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 CNR1P21554 472 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 F2RP25116 425 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 PRDX3P30048 256 aaKnown RBP12.79□□□□□ -0.36
USP49-203ENST00000394253 NDUFV1P49821 464 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 NKPD1Q17RQ9 610 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 CDONQ4KMG0 1287 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 DRICH1Q6PGQ1 229 aaPredicted RBP12.79□□□□□ -0.36
USP49-203ENST00000394253 ZNF572Q7Z3I7 529 aaPredicted RBP12.79□□□□□ -0.36
USP49-203ENST00000394253 OR6F1Q8NGZ6 308 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 OR2T4Q8NH00 348 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 SPPL2BQ8TCT7 592 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 BMFQ96LC9 184 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 SORCS2Q96PQ0 1159 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 PCED1AQ9H1Q7 454 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 MEIOCA2RUB1 952 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms