RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 WDR53Q7Z5U6 358 aaPredicted RBP17.29■□□□□ 0.36
CKS1B-203ENST00000368439 LIX1Q8N485 282 aa17.29■□□□□ 0.36
CKS1B-203ENST00000368439 OR1J4Q8NGS1 313 aa17.29■□□□□ 0.36
CKS1B-203ENST00000368439 EFHD2Q96C19 240 aaPredicted RBP17.29■□□□□ 0.36
CKS1B-203ENST00000368439 SDCCAG3Q96C92 435 aa17.29■□□□□ 0.36
CKS1B-203ENST00000368439 TMCO6Q96DC7 493 aa17.29■□□□□ 0.36
CKS1B-203ENST00000368439 C1orf50Q9BV19 199 aa17.29■□□□□ 0.36
CKS1B-203ENST00000368439 EXO5Q9H790 373 aa17.29■□□□□ 0.36
CKS1B-203ENST00000368439 ACSS1Q9NUB1 689 aaPredicted RBP17.29■□□□□ 0.36
CKS1B-203ENST00000368439 KLRF1Q9NZS2 232 aa17.29■□□□□ 0.36
CKS1B-203ENST00000368439 SH3BP4Q9P0V3 963 aa17.29■□□□□ 0.36
CKS1B-203ENST00000368439 HAO1Q9UJM8 370 aa17.29■□□□□ 0.36
CKS1B-203ENST00000368439 RNF6Q9Y252 685 aa17.29■□□□□ 0.36
CKS1B-203ENST00000368439 PCDHGB3Q9Y5G1 929 aa17.29■□□□□ 0.36
CKS1B-203ENST00000368439 PCNX3Q9H6A9 2034 aa17.29■□□□□ 0.36
CKS1B-203ENST00000368439 TEX15Q9BXT5 2789 aa17.28■□□□□ 0.36
CKS1B-203ENST00000368439 PKDREJQ9NTG1 2253 aa17.28■□□□□ 0.36
CKS1B-203ENST00000368439 NOTCH2Q04721 2471 aa17.28■□□□□ 0.36
CKS1B-203ENST00000368439 GIMAP1-GIMAP5A0A087WTJ2 511 aa17.28■□□□□ 0.36
CKS1B-203ENST00000368439 FIGNL2A6NMB9 653 aa17.28■□□□□ 0.36
CKS1B-203ENST00000368439 SCAMP2O15127 329 aaKnown RBP17.28■□□□□ 0.36
CKS1B-203ENST00000368439 WDR1O75083 606 aa17.28■□□□□ 0.36
CKS1B-203ENST00000368439 TRAPPC6AO75865 159 aa17.28■□□□□ 0.36
CKS1B-203ENST00000368439 CYP4B1P13584 511 aa17.28■□□□□ 0.36
CKS1B-203ENST00000368439 BGNP21810 368 aa17.28■□□□□ 0.36
CKS1B-203ENST00000368439 MAPK1P28482 360 aa17.28■□□□□ 0.36
CKS1B-203ENST00000368439 PMPCAQ10713 525 aa17.28■□□□□ 0.36
CKS1B-203ENST00000368439 EFR3AQ14156 821 aa17.28■□□□□ 0.36
CKS1B-203ENST00000368439 PTGR1Q14914 329 aa17.28■□□□□ 0.36
CKS1B-203ENST00000368439 CYP27C1Q4G0S4 372 aa17.28■□□□□ 0.36
CKS1B-203ENST00000368439 EIPR1Q53HC9 387 aa17.28■□□□□ 0.36
CKS1B-203ENST00000368439 NHSL2Q5HYW2 709 aa17.28■□□□□ 0.36
CKS1B-203ENST00000368439 WLSQ5T9L3 541 aa17.28■□□□□ 0.36
CKS1B-203ENST00000368439 IL23RQ5VWK5 629 aa17.28■□□□□ 0.36
CKS1B-203ENST00000368439 PPP1R14CQ8TAE6 165 aa17.28■□□□□ 0.36
CKS1B-203ENST00000368439 NUDT8Q8WV74 236 aa17.28■□□□□ 0.36
CKS1B-203ENST00000368439 GIMAP5Q96F15 307 aa17.28■□□□□ 0.36
CKS1B-203ENST00000368439 ZBED6CLQ96FA7 236 aaPredicted RBP17.28■□□□□ 0.36
CKS1B-203ENST00000368439 TTYH2Q9BSA4 534 aa17.28■□□□□ 0.36
CKS1B-203ENST00000368439 KCNK9Q9NPC2 374 aa17.28■□□□□ 0.36
CKS1B-203ENST00000368439 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.28■□□□□ 0.36
CKS1B-203ENST00000368439 RAP2CQ9Y3L5 183 aa17.28■□□□□ 0.36
CKS1B-203ENST00000368439 HNRNPRO43390 633 aaKnown RBP17.27■□□□□ 0.36
CKS1B-203ENST00000368439 GLI4P10075 376 aa17.27■□□□□ 0.36
CKS1B-203ENST00000368439 PRPS2P11908 318 aa17.27■□□□□ 0.36
CKS1B-203ENST00000368439 IL12BP29460 328 aa17.27■□□□□ 0.36
CKS1B-203ENST00000368439 KIR3DL1P43629 444 aa17.27■□□□□ 0.36
CKS1B-203ENST00000368439 SLC1A6P48664 564 aa17.27■□□□□ 0.36
CKS1B-203ENST00000368439 MANFP55145 182 aaKnown RBP17.27■□□□□ 0.36
CKS1B-203ENST00000368439 WDR4P57081 412 aaKnown RBP17.27■□□□□ 0.36
CKS1B-203ENST00000368439 MLC1Q15049 377 aa17.27■□□□□ 0.36
CKS1B-203ENST00000368439 WIPI1Q5MNZ9 446 aaPredicted RBP17.27■□□□□ 0.36
CKS1B-203ENST00000368439 VASNQ6EMK4 673 aa17.27■□□□□ 0.36
CKS1B-203ENST00000368439 B3GNT6Q6ZMB0 384 aa17.27■□□□□ 0.36
CKS1B-203ENST00000368439 ACAD11Q709F0 780 aa17.27■□□□□ 0.36
CKS1B-203ENST00000368439 R3HCC1LQ7Z5L2 792 aaKnown RBP17.27■□□□□ 0.36
CKS1B-203ENST00000368439 RIMKLAQ8IXN7 391 aa17.27■□□□□ 0.36
CKS1B-203ENST00000368439 ULK2Q8IYT8 1036 aa17.27■□□□□ 0.36
CKS1B-203ENST00000368439 FNDC5Q8NAU1 212 aa17.27■□□□□ 0.36
CKS1B-203ENST00000368439 FAM83FQ8NEG4 500 aaPredicted RBP17.27■□□□□ 0.36
CKS1B-203ENST00000368439 OR7A2PQ8NGA2 310 aa17.27■□□□□ 0.36
CKS1B-203ENST00000368439 ZFP28Q8NHY6 868 aa17.27■□□□□ 0.36
CKS1B-203ENST00000368439 RND1Q92730 232 aa17.27■□□□□ 0.36
CKS1B-203ENST00000368439 TUBGCP3Q96CW5 907 aa17.27■□□□□ 0.36
CKS1B-203ENST00000368439 TIMP4Q99727 224 aa17.27■□□□□ 0.36
CKS1B-203ENST00000368439 CHST11Q9NPF2 352 aa17.27■□□□□ 0.36
CKS1B-203ENST00000368439 COQ3Q9NZJ6 369 aa17.27■□□□□ 0.36
CKS1B-203ENST00000368439 CBLCQ9ULV8 474 aa17.27■□□□□ 0.36
CKS1B-203ENST00000368439 MAPRE3Q9UPY8 281 aa17.27■□□□□ 0.36
CKS1B-203ENST00000368439 SLC6A5Q9Y345 797 aa17.27■□□□□ 0.36
CKS1B-203ENST00000368439 OR10H1Q9Y4A9 318 aa17.27■□□□□ 0.36
CKS1B-203ENST00000368439 WIF1Q9Y5W5 379 aa17.27■□□□□ 0.36
CKS1B-203ENST00000368439 KIAA1549Q9HCM3 1950 aa17.27■□□□□ 0.36
CKS1B-203ENST00000368439 C17orf51A8MQB3 221 aa17.26■□□□□ 0.35
CKS1B-203ENST00000368439 FADS1O60427 444 aa17.26■□□□□ 0.35
CKS1B-203ENST00000368439 CBR3O75828 277 aa17.26■□□□□ 0.35
CKS1B-203ENST00000368439 MYZAPP0CAP1 466 aa17.26■□□□□ 0.35
CKS1B-203ENST00000368439 LAMP1P11279 417 aa17.26■□□□□ 0.35
CKS1B-203ENST00000368439 PRF1P14222 555 aa17.26■□□□□ 0.35
CKS1B-203ENST00000368439 EFNA1P20827 205 aaPredicted RBP17.26■□□□□ 0.35
CKS1B-203ENST00000368439 GRK2P25098 689 aa17.26■□□□□ 0.35
CKS1B-203ENST00000368439 KRT20P35900 424 aa17.26■□□□□ 0.35
CKS1B-203ENST00000368439 EXOSC6Q5RKV6 272 aaKnown RBP17.26■□□□□ 0.35
CKS1B-203ENST00000368439 C1orf185Q5T7R7 199 aa17.26■□□□□ 0.35
CKS1B-203ENST00000368439 SEM1Q6ZVN7 128 aa17.26■□□□□ 0.35
CKS1B-203ENST00000368439 CCDC71Q8IV32 467 aaPredicted RBP17.26■□□□□ 0.35
CKS1B-203ENST00000368439 KRTCAP2Q8N6L1 136 aa17.26■□□□□ 0.35
CKS1B-203ENST00000368439 ACBD4Q8NC06 268 aa17.26■□□□□ 0.35
CKS1B-203ENST00000368439 MARVELD3Q96A59 401 aa17.26■□□□□ 0.35
CKS1B-203ENST00000368439 COQ8BQ96D53 544 aa17.26■□□□□ 0.35
CKS1B-203ENST00000368439 OR2B2Q9GZK3 357 aa17.26■□□□□ 0.35
CKS1B-203ENST00000368439 PRDM14Q9GZV8 571 aa17.26■□□□□ 0.35
CKS1B-203ENST00000368439 Q9N2J8 555 aa17.26■□□□□ 0.35
CKS1B-203ENST00000368439 SERHLQ9NQF3 203 aa17.26■□□□□ 0.35
CKS1B-203ENST00000368439 SIRT3Q9NTG7 399 aaPredicted RBP17.26■□□□□ 0.35
CKS1B-203ENST00000368439 ASIC5Q9NY37 505 aa17.26■□□□□ 0.35
CKS1B-203ENST00000368439 FLRT3Q9NZU0 649 aa17.26■□□□□ 0.35
CKS1B-203ENST00000368439 C15orf38-AP3S2A0A0A6YYH1 394 aa17.25■□□□□ 0.35
CKS1B-203ENST00000368439 GXYLT2A0PJZ3 443 aa17.25■□□□□ 0.35
CKS1B-203ENST00000368439 TTC36A6NLP5 189 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms