RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 OR4K14Q8NGD5 310 aa12.02□□□□□ -0.48
CLK3-201ENST00000345005 OR56A1Q8NGH5 318 aa12.02□□□□□ -0.48
CLK3-201ENST00000345005 OR10Q1Q8NGQ4 319 aa12.02□□□□□ -0.48
CLK3-201ENST00000345005 LILRB4Q8NHJ6 448 aa12.02□□□□□ -0.48
CLK3-201ENST00000345005 SUN3Q8TAQ9 357 aa12.02□□□□□ -0.48
CLK3-201ENST00000345005 MED30Q96HR3 178 aa12.02□□□□□ -0.48
CLK3-201ENST00000345005 TPD52L3Q96J77 140 aa12.02□□□□□ -0.48
CLK3-201ENST00000345005 SLC35G5Q96KT7 338 aa12.02□□□□□ -0.48
CLK3-201ENST00000345005 ZNF681Q96N22 645 aa12.02□□□□□ -0.48
CLK3-201ENST00000345005 MAP3K3Q99759 626 aa12.02□□□□□ -0.48
CLK3-201ENST00000345005 C6orf62Q9GZU0 229 aaPredicted RBP12.02□□□□□ -0.48
CLK3-201ENST00000345005 C3orf14Q9HBI5 128 aa12.02□□□□□ -0.48
CLK3-201ENST00000345005 EXD2Q9NVH0 621 aa12.02□□□□□ -0.48
CLK3-201ENST00000345005 EPHA6Q9UF33 1036 aa12.02□□□□□ -0.48
CLK3-201ENST00000345005 ABCG2Q9UNQ0 655 aa12.02□□□□□ -0.48
CLK3-201ENST00000345005 TRAPPC4Q9Y296 219 aa12.02□□□□□ -0.48
CLK3-201ENST00000345005 POFUT2Q9Y2G5 429 aa12.02□□□□□ -0.48
CLK3-201ENST00000345005 ZNF451Q9Y4E5 1061 aa12.02□□□□□ -0.48
CLK3-201ENST00000345005 LYVE1Q9Y5Y7 322 aa12.02□□□□□ -0.48
CLK3-201ENST00000345005 UNC13CQ8NB66 2214 aa12.02□□□□□ -0.49
CLK3-201ENST00000345005 ARID1BQ8NFD5 2236 aaPredicted RBP12.02□□□□□ -0.49
CLK3-201ENST00000345005 ANKRD34BA5PLL1 514 aa12.02□□□□□ -0.49
CLK3-201ENST00000345005 C5orf58C9J3I9 102 aa12.02□□□□□ -0.49
CLK3-201ENST00000345005 TBX1O43435 398 aa12.02□□□□□ -0.49
CLK3-201ENST00000345005 GALR3O60755 368 aaPredicted RBP12.02□□□□□ -0.49
CLK3-201ENST00000345005 C8orf89P0DMQ9 161 aa12.02□□□□□ -0.49
CLK3-201ENST00000345005 CYP4B1P13584 511 aa12.02□□□□□ -0.49
CLK3-201ENST00000345005 AQP1P29972 269 aa12.02□□□□□ -0.49
CLK3-201ENST00000345005 ALDH4A1P30038 563 aa12.02□□□□□ -0.49
CLK3-201ENST00000345005 ARRB1P49407 418 aaPredicted RBP12.02□□□□□ -0.49
CLK3-201ENST00000345005 PMS2CLQ68D20 193 aa12.02□□□□□ -0.49
CLK3-201ENST00000345005 TNFAIP8L2Q6P589 184 aaPredicted RBP12.02□□□□□ -0.49
CLK3-201ENST00000345005 GDPGP1Q6ZNW5 385 aa12.02□□□□□ -0.49
CLK3-201ENST00000345005 ZNF367Q7RTV3 350 aa12.02□□□□□ -0.49
CLK3-201ENST00000345005 VTCN1Q7Z7D3 282 aa12.02□□□□□ -0.49
CLK3-201ENST00000345005 ENTHD1Q8IYW4 607 aa12.02□□□□□ -0.49
CLK3-201ENST00000345005 PARP16Q8N5Y8 322 aa12.02□□□□□ -0.49
CLK3-201ENST00000345005 OR7G1Q8NGA0 311 aa12.02□□□□□ -0.49
CLK3-201ENST00000345005 KLHL6Q8WZ60 621 aa12.02□□□□□ -0.49
CLK3-201ENST00000345005 ZDHHC12Q96GR4 267 aa12.02□□□□□ -0.49
CLK3-201ENST00000345005 C10orf90Q96M02 699 aa12.02□□□□□ -0.49
CLK3-201ENST00000345005 CD180Q99467 661 aa12.02□□□□□ -0.49
CLK3-201ENST00000345005 NUAK2Q9H093 628 aa12.02□□□□□ -0.49
CLK3-201ENST00000345005 ZCCHC3Q9NUD5 404 aaKnown RBP12.02□□□□□ -0.49
CLK3-201ENST00000345005 LRIT1Q9P2V4 623 aa12.02□□□□□ -0.49
CLK3-201ENST00000345005 SUSD2Q9UGT4 822 aa12.02□□□□□ -0.49
CLK3-201ENST00000345005 MRPS2Q9Y399 296 aaKnown RBP12.02□□□□□ -0.49
CLK3-201ENST00000345005 PCDHGB6Q9Y5F9 930 aa12.02□□□□□ -0.49
CLK3-201ENST00000345005 PCDHGA6Q9Y5G7 932 aa12.02□□□□□ -0.49
CLK3-201ENST00000345005 EFCAB10A6NFE3 127 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 TLCD2A6NGC4 264 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 EMC8O43402 210 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 NUDT21O43809 227 aaKnown RBP12.01□□□□□ -0.49
CLK3-201ENST00000345005 PCDHGA12O60330 932 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 B4GALT2O60909 372 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 LCKP06239 509 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 FHP07954 510 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 TRAPPC2P0DI81 140 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 TRAPPC2BP0DI82 140 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 SPTBP11277 2137 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 TDGF1P13385 188 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 CASP3P42574 277 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 XKP51811 444 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 CRYBA2P53672 197 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 UGT2B15P54855 530 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 PCBP3P57721 371 aaKnown RBP12.01□□□□□ -0.49
CLK3-201ENST00000345005 SNRPNP63162 240 aaKnown RBP12.01□□□□□ -0.49
CLK3-201ENST00000345005 SKP1P63208 163 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 KCNJ10P78508 379 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 PRR5P85299 388 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 PPP1R8Q12972 351 aaKnown RBP12.01□□□□□ -0.49
CLK3-201ENST00000345005 NDUFA9Q16795 377 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 ZNF750Q32MQ0 723 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 COLEC12Q5KU26 742 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 AGAP6Q5VW22 663 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 FAM92BQ6ZTR7 304 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 USP53Q70EK8 1073 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 SLC25A45Q8N413 288 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 STX19Q8N4C7 294 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 ANGPTL6Q8NI99 470 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 ZNF675Q8TD23 568 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 SLC38A5Q8WUX1 472 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 HTRA1Q92743 480 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 EDAQ92838 391 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 AGAP4Q96P64 663 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 ELF4Q99607 663 aaPredicted RBP12.01□□□□□ -0.49
CLK3-201ENST00000345005 CHRNA10Q9GZZ6 450 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 RUBCNLQ9H714 662 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 NEK6Q9HC98 313 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 CNOT2Q9NZN8 540 aaKnown RBP12.01□□□□□ -0.49
CLK3-201ENST00000345005 PCDHGA3Q9Y5H0 932 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 RNF215Q9Y6U7 377 aa12.01□□□□□ -0.49
CLK3-201ENST00000345005 HMGN4O00479 90 aa12□□□□□ -0.49
CLK3-201ENST00000345005 CCNKO75909 580 aa12□□□□□ -0.49
CLK3-201ENST00000345005 PDE9AO76083 593 aa12□□□□□ -0.49
CLK3-201ENST00000345005 LIPAP38571 399 aa12□□□□□ -0.49
CLK3-201ENST00000345005 GPR3P46089 330 aa12□□□□□ -0.49
CLK3-201ENST00000345005 KHKP50053 298 aa12□□□□□ -0.49
CLK3-201ENST00000345005 RPS26P62854 115 aaKnown RBP12□□□□□ -0.49
CLK3-201ENST00000345005 DUSP2Q05923 314 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms