RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 TTPALQ9BTX7 342 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 AAASQ9NRG9 546 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ZDHHC8Q9ULC8 765 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 PCDHB7Q9Y5E2 793 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 A0A1B0GVT2 93 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 GPR39O43194 453 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 IFNGP01579 166 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 RCAN2Q14206 197 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 NKPD1Q17RQ9 610 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 GLYATQ6IB77 296 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 IL27RAQ6UWB1 636 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 OR5K1Q8NHB7 308 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SLC2A12Q8TD20 617 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 WNT5BQ9H1J7 359 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 CALML5Q9NZT1 146 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 PCDHGA9Q9Y5G4 932 aaKnown RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 M0R3H8 397 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 AFF3P51826 1226 aaKnown RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 FASTKQ14296 549 aaKnown RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 INTS12Q96CB8 462 aaKnown RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 HPDLQ96IR7 371 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SLITRK1Q96PX8 696 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 GATA5Q9BWX5 397 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 PPP1R3CQ9UQK1 317 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 KLF4O43474 513 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 GATBO75879 557 aaKnown RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF205O95201 554 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 CD63P08962 238 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 CTSKP43235 329 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF177Q13360 481 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 INO80EQ8NBZ0 244 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 PRR7Q8TB68 274 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SIGLEC10Q96LC7 697 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 CITED1Q99966 193 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF559Q9BR84 538 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SCP2D1Q9UJQ7 156 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 PRRC2CQ9Y520 2896 aaKnown RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 A0A1W2PRB8 838 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 AQP7O14520 342 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SHMT2P34897 504 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ZACNQ401N2 412 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SFRP5Q5T4F7 317 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 TMEM185AQ8NFB2 350 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SLC39A8Q9C0K1 460 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 POMKQ9H5K3 350 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 MED17Q9NVC6 651 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 C3orf80F5H4A9 247 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SOCS6O14544 535 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 GSTM3P21266 225 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 HTR2AP28223 471 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 TMEM88Q6PEY1 159 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 C1orf186Q6ZWK4 172 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 PARGQ86W56 976 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 NAXDQ8IW45 347 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 CDK20Q8IZL9 346 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 NAT8LQ8N9F0 302 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 OSGEPL1Q9H4B0 414 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 NLKQ9UBE8 527 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 NOCTQ9UK39 431 aaKnown RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ARL5CA6NH57 179 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 KDELR1P24390 212 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 RFC3P40938 356 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 PITX1P78337 314 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SCGB2A2Q13296 93 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 PCK2Q16822 640 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 DMRTA1Q5VZB9 504 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ZSCAN1Q8NBB4 408 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 FUNDC2Q9BWH2 189 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 HEBP1Q9NRV9 189 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 USP18Q9UMW8 372 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 RNF11Q9Y3C5 154 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ATRNL1Q5VV63 1379 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 KCNJ13O60928 360 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ANXA5P08758 320 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 CCNOP22674 350 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ARSFP54793 590 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 GRM3Q14832 879 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 UGCGQ16739 394 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 PM20D1Q6GTS8 502 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 MAL2Q969L2 176 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SERPINB11Q96P15 392 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 TPPP3Q9BW30 176 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 RANGRFQ9HD47 186 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ACOT13Q9NPJ3 140 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 HSFX4A0A1B0GTS1 333 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 FAM240BA0A1B0GVZ2 78 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 HSFX3A0A1B0GWH4 333 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 K7EPI3 171 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 EI24O14681 340 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 MRASO14807 208 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 B4GALT4O60513 344 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 LILRB3O75022 631 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 GJB5O95377 273 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 RAB3BP20337 219 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ENPP1P22413 925 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 CRHBPP24387 322 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ALDH3B1P43353 468 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 BDH1Q02338 343 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms