RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 NUAK2Q9H093 628 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 PLGRKTQ9HBL7 147 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 TNFRSF10DQ9UBN6 386 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 PEX11BO96011 259 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 EIF1AXP47813 144 aaKnown RBP9.54□□□□□ -0.88
USP54-201ENST00000339859 OR1E2P47887 323 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 MALLQ13021 153 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 HES3Q5TGS1 186 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 CLEC14AQ86T13 490 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 DND1Q8IYX4 353 aaKnown RBP9.54□□□□□ -0.88
USP54-201ENST00000339859 LMF2Q9BU23 707 aaKnown RBP9.54□□□□□ -0.88
USP54-201ENST00000339859 CHMP1AQ9HD42 196 aaPredicted RBP9.54□□□□□ -0.88
USP54-201ENST00000339859 TAS2R1Q9NYW7 299 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 USP36Q9P275 1121 aaKnown RBP9.54□□□□□ -0.88
USP54-201ENST00000339859 EMCNQ9ULC0 261 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 WDR37Q9Y2I8 494 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 MGAMO43451 1857 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 A6NIZ1 184 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 SULT2B1O00204 365 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 GALR2O43603 387 aaPredicted RBP9.54□□□□□ -0.88
USP54-201ENST00000339859 RAP1BP61224 184 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 RAP1AP62834 184 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 ELAVL1Q15717 326 aaKnown RBP9.54□□□□□ -0.88
USP54-201ENST00000339859 CCSMST1Q4G0I0 132 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 EEF1A1P5Q5VTE0 462 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 ZNF57Q68EA5 555 aaPredicted RBP9.54□□□□□ -0.88
USP54-201ENST00000339859 PAMR1Q6UXH9 720 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 ABI3BPQ7Z7G0 1075 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 ZNF740Q8NDX6 193 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 ADOQ96SZ5 270 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 CLMPQ9H6B4 373 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 C15orf41Q9Y2V0 281 aa9.54□□□□□ -0.88
USP54-201ENST00000339859 LSM1O15116 133 aaKnown RBP9.53□□□□□ -0.88
USP54-201ENST00000339859 KDELR2P33947 212 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 TLE3Q04726 772 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 ARHGAP11AQ6P4F7 1023 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 SDR39U1Q9NRG7 319 aaPredicted RBP9.53□□□□□ -0.88
USP54-201ENST00000339859 SLC23A2Q9UGH3 650 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 SPEF1Q9Y4P9 236 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 CD82P27701 267 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 SFTPDP35247 375 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 MAP3K8P41279 467 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 SLC15A1P46059 708 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 COL9A2Q14055 689 aaPredicted RBP9.53□□□□□ -0.88
USP54-201ENST00000339859 DSG2Q14126 1118 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 ARMC4Q5T2S8 1044 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 CES4AQ5XG92 561 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 MORN4Q8NDC4 146 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 COQ7Q99807 217 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 PIGQQ9BRB3 760 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 TCEAL2Q9H3H9 227 aaPredicted RBP9.53□□□□□ -0.88
USP54-201ENST00000339859 DENND2DQ9H6A0 471 aaPredicted RBP9.53□□□□□ -0.88
USP54-201ENST00000339859 NGBQ9NPG2 151 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 VDAC3Q9Y277 283 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 EIF1AYO14602 144 aaKnown RBP9.53□□□□□ -0.88
USP54-201ENST00000339859 TOX3O15405 576 aaPredicted RBP9.53□□□□□ -0.88
USP54-201ENST00000339859 WDPCPO95876 746 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 HMGN2P05204 90 aaKnown RBP9.53□□□□□ -0.88
USP54-201ENST00000339859 ST6GAL1P15907 406 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 ARNTP27540 789 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 RCVRNP35243 200 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 STAT5AP42229 794 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 FAM180BQ6P0A1 224 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 LAPTM4BQ86VI4 370 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 OR2T33Q8NG76 320 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 C1GALT1C1Q96EU7 318 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 ERMAPQ96PL5 475 aaPredicted RBP9.53□□□□□ -0.88
USP54-201ENST00000339859 SMOC1Q9H4F8 434 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 ZNF160Q9HCG1 818 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 SH3BGRL2Q9UJC5 107 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 ZNF443Q9Y2A4 671 aaPredicted RBP9.53□□□□□ -0.88
USP54-201ENST00000339859 KLK10O43240 276 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 OR2T1O43869 369 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 APOC1P02654 83 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 PRPS1P60891 318 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 WBP2NLQ6ICG8 309 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 NDUFAF7Q7L592 441 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 ENDOVQ8N8Q3 282 aaKnown RBP9.53□□□□□ -0.88
USP54-201ENST00000339859 ZSCAN4Q8NAM6 433 aaPredicted RBP9.53□□□□□ -0.88
USP54-201ENST00000339859 ISL2Q96A47 359 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 TM4SF18Q96CE8 201 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 TCF7L1Q9HCS4 588 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 EDARQ9UNE0 448 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 SLC22A7Q9Y694 548 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 A0A1B0GVI7 797 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 FCARP24071 287 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 EDNRAP25101 427 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 SFTPA1Q8IWL2 248 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 CANT1Q8WVQ1 401 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 PIK3R3Q92569 461 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 THRSPQ92748 146 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 OMA1Q96E52 524 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 ZNF419Q96HQ0 510 aaPredicted RBP9.53□□□□□ -0.88
USP54-201ENST00000339859 SEMA4GQ9NTN9 838 aa9.53□□□□□ -0.88
USP54-201ENST00000339859 LRIT2A6NDA9 550 aa9.52□□□□□ -0.88
USP54-201ENST00000339859 ANXA2P2A6NMY6 339 aa9.52□□□□□ -0.88
USP54-201ENST00000339859 FANCGO15287 622 aa9.52□□□□□ -0.88
USP54-201ENST00000339859 STK17BO94768 372 aa9.52□□□□□ -0.88
USP54-201ENST00000339859 ANXA2P07355 339 aaKnown RBP9.52□□□□□ -0.88
USP54-201ENST00000339859 GGT1P19440 569 aa9.52□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms