RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 PSPHP78330 225 aa20.44■□□□□ 0.86
SDC3-202ENST00000339394 MRPS22P82650 360 aaKnown RBP20.44■□□□□ 0.86
SDC3-202ENST00000339394 TXNL4AP83876 142 aaKnown RBP20.44■□□□□ 0.86
SDC3-202ENST00000339394 PLCXD2Q0VAA5 305 aa20.44■□□□□ 0.86
SDC3-202ENST00000339394 OPN5Q6U736 354 aa20.44■□□□□ 0.86
SDC3-202ENST00000339394 SLC34A3Q8N130 599 aa20.44■□□□□ 0.86
SDC3-202ENST00000339394 BCORP1Q8N888 145 aa20.44■□□□□ 0.86
SDC3-202ENST00000339394 TTC9Q92623 222 aa20.44■□□□□ 0.86
SDC3-202ENST00000339394 OMA1Q96E52 524 aa20.44■□□□□ 0.86
SDC3-202ENST00000339394 SH3GL1Q99961 368 aa20.44■□□□□ 0.86
SDC3-202ENST00000339394 BTBD2Q9BX70 525 aa20.44■□□□□ 0.86
SDC3-202ENST00000339394 KAT8Q9H7Z6 458 aaKnown RBP20.44■□□□□ 0.86
SDC3-202ENST00000339394 BOD1L1Q8NFC6 3051 aa20.44■□□□□ 0.86
SDC3-202ENST00000339394 KCNK2O95069 426 aa20.43■□□□□ 0.86
SDC3-202ENST00000339394 AGR2O95994 175 aa20.43■□□□□ 0.86
SDC3-202ENST00000339394 FBXO45P0C2W1 286 aa20.43■□□□□ 0.86
SDC3-202ENST00000339394 ANXA11P50995 505 aaKnown RBP20.43■□□□□ 0.86
SDC3-202ENST00000339394 RHDQ02161 417 aa20.43■□□□□ 0.86
SDC3-202ENST00000339394 IL20RBQ6UXL0 311 aa20.43■□□□□ 0.86
SDC3-202ENST00000339394 HAS2Q92819 552 aa20.43■□□□□ 0.86
SDC3-202ENST00000339394 EXD2Q9NVH0 621 aa20.43■□□□□ 0.86
SDC3-202ENST00000339394 BSNQ9UPA5 3926 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 DOCK10Q96BY6 2186 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 B2RBV5 119 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 K7EM74 188 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 REM1O75628 298 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 PDGFAP04085 211 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 NUDT7P0C024 238 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 CD96P40200 585 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 CYB561P49447 251 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 HLCSP50747 726 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 POU6F2P78424 691 aaPredicted RBP20.42■□□□□ 0.86
SDC3-202ENST00000339394 SLC25A3Q00325 362 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 KCNAB2Q13303 367 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 TUBA3CQ13748 450 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 DECR1Q16698 335 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 ZNF791Q3KP31 576 aaPredicted RBP20.42■□□□□ 0.86
SDC3-202ENST00000339394 CCNJQ5T5M9 372 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 HEPHL1Q6MZM0 1159 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 TUBA3EQ6PEY2 450 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 FIGNL1Q6PIW4 674 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 GALNT10Q86SR1 603 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 FAM110BQ8TC76 370 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 EFHD2Q96C19 240 aaPredicted RBP20.42■□□□□ 0.86
SDC3-202ENST00000339394 SPACA9Q96E40 222 aaPredicted RBP20.42■□□□□ 0.86
SDC3-202ENST00000339394 ADOQ96SZ5 270 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 UTP23Q9BRU9 249 aaKnown RBP20.42■□□□□ 0.86
SDC3-202ENST00000339394 RNF32Q9H0A6 362 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 RYDENQ9NUL5 291 aaKnown RBP20.42■□□□□ 0.86
SDC3-202ENST00000339394 CACNA1GO43497 2377 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 PRAMEF27A3QJZ7 478 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 CDK2AP1O14519 115 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 TNFRSF21O75509 655 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 PPM1BO75688 479 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 IGKV1D-16P01601 117 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 BMP2P12643 396 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 NAGAP17050 411 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 RFX3P48380 749 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 TMED10P49755 219 aaKnown RBP20.42■□□□□ 0.86
SDC3-202ENST00000339394 DSTNP60981 165 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 PSME3P61289 254 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 MXRA7P84157 204 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 OC90Q02509 493 aaPredicted RBP20.42■□□□□ 0.86
SDC3-202ENST00000339394 DCST2Q5T1A1 773 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 ATAD3BQ5T9A4 648 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 CHDHQ8NE62 594 aaPredicted RBP20.42■□□□□ 0.86
SDC3-202ENST00000339394 OR10A6Q8NH74 314 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 DIO2Q92813 273 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 TMEM125Q96AQ2 219 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 TRIM45Q9H8W5 580 aaPredicted RBP20.42■□□□□ 0.86
SDC3-202ENST00000339394 FBXO34Q9NWN3 711 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 HPF1Q9NWY4 346 aa20.42■□□□□ 0.86
SDC3-202ENST00000339394 THUMPD1Q9NXG2 353 aaKnown RBP20.42■□□□□ 0.86
SDC3-202ENST00000339394 MRTO4Q9UKD2 239 aaKnown RBP20.42■□□□□ 0.86
SDC3-202ENST00000339394 NBEAQ8NFP9 2946 aa20.41■□□□□ 0.86
SDC3-202ENST00000339394 C15orf38-AP3S2A0A0A6YYH1 394 aa20.41■□□□□ 0.86
SDC3-202ENST00000339394 TSPAN2O60636 221 aa20.41■□□□□ 0.86
SDC3-202ENST00000339394 IL33O95760 270 aa20.41■□□□□ 0.86
SDC3-202ENST00000339394 KRT20P35900 424 aa20.41■□□□□ 0.86
SDC3-202ENST00000339394 CPOXP36551 454 aa20.41■□□□□ 0.86
SDC3-202ENST00000339394 FBXW4P57775 412 aa20.41■□□□□ 0.86
SDC3-202ENST00000339394 ARG2P78540 354 aa20.41■□□□□ 0.86
SDC3-202ENST00000339394 FUT5Q11128 374 aa20.41■□□□□ 0.86
SDC3-202ENST00000339394 NTRK2Q16620 822 aa20.41■□□□□ 0.86
SDC3-202ENST00000339394 ARHGAP11BQ3KRB8 267 aa20.41■□□□□ 0.86
SDC3-202ENST00000339394 DESI1Q6ICB0 168 aa20.41■□□□□ 0.86
SDC3-202ENST00000339394 SPINK14Q6IE38 97 aa20.41■□□□□ 0.86
SDC3-202ENST00000339394 IGFL3Q6UXB1 125 aa20.41■□□□□ 0.86
SDC3-202ENST00000339394 C16orf62Q7Z3J2 963 aa20.41■□□□□ 0.86
SDC3-202ENST00000339394 ARPINQ7Z6K5 226 aa20.41■□□□□ 0.86
SDC3-202ENST00000339394 SLC15A3Q8IY34 581 aa20.41■□□□□ 0.86
SDC3-202ENST00000339394 RBM15BQ8NDT2 890 aaKnown RBP20.41■□□□□ 0.86
SDC3-202ENST00000339394 OR5M3Q8NGP4 307 aa20.41■□□□□ 0.86
SDC3-202ENST00000339394 MAL2Q969L2 176 aa20.41■□□□□ 0.86
SDC3-202ENST00000339394 ECSITQ9BQ95 431 aa20.41■□□□□ 0.86
SDC3-202ENST00000339394 CMTM6Q9NX76 183 aa20.41■□□□□ 0.86
SDC3-202ENST00000339394 LRFN1Q9P244 771 aa20.41■□□□□ 0.86
SDC3-202ENST00000339394 PCDHGB7Q9Y5F8 929 aa20.41■□□□□ 0.86
SDC3-202ENST00000339394 OR5H15A6NDH6 313 aa20.4■□□□□ 0.86
SDC3-202ENST00000339394 OR6C70A6NIJ9 312 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms