RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 ST6GAL1P15907 406 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 HOXC12P31275 282 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 DCAF12Q5T6F0 453 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 OGFRL1Q5TC84 451 aaPredicted RBP6.46□□□□□ -1.38
SF3B1-201ENST00000335508 UNQ6126/PRO20091Q6UXV3 157 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 ATCAYQ86WG3 371 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 RPS19BP1Q86WX3 136 aaKnown RBP6.46□□□□□ -1.38
SF3B1-201ENST00000335508 CROCCP3Q8IVE0 287 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 MARVELD2Q8N4S9 558 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 EID2Q8N6I1 236 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 AQP11Q8NBQ7 271 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 OR6K6Q8NGW6 343 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 NXPE2Q96DL1 559 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 ELP4Q96EB1 424 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 PRRC1Q96M27 445 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 KLHL1Q9NR64 748 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 SLC39A1Q9NY26 324 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 SERGEFQ9UGK8 458 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 CDH10Q9Y6N8 788 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 RNF215Q9Y6U7 377 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 ANKRD11Q6UB99 2663 aaPredicted RBP6.46□□□□□ -1.38
SF3B1-201ENST00000335508 GPR171O14626 319 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 HTR3AP46098 478 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 DLX2Q07687 328 aaPredicted RBP6.46□□□□□ -1.38
SF3B1-201ENST00000335508 HYAL2Q12891 473 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 PPP1R8Q12972 351 aaKnown RBP6.46□□□□□ -1.38
SF3B1-201ENST00000335508 COL13A1Q5TAT6 717 aaPredicted RBP6.46□□□□□ -1.38
SF3B1-201ENST00000335508 TRIQKQ629K1 86 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 ANKRD26P1Q6NSI1 321 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 MFSD12Q6NUT3 480 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 PRR11Q96HE9 360 aaPredicted RBP6.46□□□□□ -1.38
SF3B1-201ENST00000335508 ZNF559Q9BR84 538 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 SP140LQ9H930 580 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 ZBTB20Q9HC78 741 aaPredicted RBP6.46□□□□□ -1.38
SF3B1-201ENST00000335508 ICKQ9UPZ9 632 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 ERVK-19Q9WJR5 959 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 PEX16Q9Y5Y5 336 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 A0A1W2PQ72 361 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 A0A1W2PQF6 199 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 CDC123O75794 336 aaPredicted RBP6.45□□□□□ -1.38
SF3B1-201ENST00000335508 NAGAP17050 411 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 C4BPBP20851 252 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 ZNF425Q6IV72 752 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 FAM83HQ6ZRV2 1179 aaPredicted RBP6.45□□□□□ -1.38
SF3B1-201ENST00000335508 RNF113BQ8IZP6 322 aaKnown RBP6.45□□□□□ -1.38
SF3B1-201ENST00000335508 FBXL20Q96IG2 436 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 FAM210AQ96ND0 272 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 ERVMER34-1Q9H9K5 563 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 PLGRKTQ9HBL7 147 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 TRIM36Q9NQ86 728 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 ATG4BQ9Y4P1 393 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 UBFD1O14562 309 aaKnown RBP6.45□□□□□ -1.38
SF3B1-201ENST00000335508 AIREO43918 545 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 STATHP02808 62 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 SBK3P0C264 359 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 MSX1P28360 303 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 PROX2Q3B8N5 592 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 GPR139Q6DWJ6 353 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 TMEM71Q6P5X7 295 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 TMEM107Q6UX40 140 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 COMMD2Q86X83 199 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 ZSCAN1Q8NBB4 408 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 OR7G1Q8NGA0 311 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 LOXL4Q96JB6 756 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 RBCK1Q9BYM8 510 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 SIRT5Q9NXA8 310 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 PTTG2Q9NZH5 202 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 FBXO4Q9UKT5 387 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 BTBD3Q9Y2F9 522 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 PCDHGA8Q9Y5G5 932 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 IGHV1OR15-9A0A0B4J2B8 117 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 SAGE2PA6NJ88 616 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 EFCAB9A8MZ26 197 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 SLC22A1O15245 554 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 TLX2O43763 284 aaPredicted RBP6.45□□□□□ -1.38
SF3B1-201ENST00000335508 PCDHGA12O60330 932 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 RAB36O95755 333 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 CD22P20273 847 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 HOXA6P31267 233 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 PRPS1P60891 318 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.45□□□□□ -1.38
SF3B1-201ENST00000335508 POMZP3Q6PJE2 187 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 ZNF547Q8IVP9 402 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 SLC25A43Q8WUT9 341 aaPredicted RBP6.45□□□□□ -1.38
SF3B1-201ENST00000335508 OIT3Q8WWZ8 545 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 HSPBAP1Q96EW2 488 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 SH3YL1Q96HL8 342 aaPredicted RBP6.45□□□□□ -1.38
SF3B1-201ENST00000335508 CDADC1Q9BWV3 514 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 NMNAT1Q9HAN9 279 aaPredicted RBP6.45□□□□□ -1.38
SF3B1-201ENST00000335508 B3GAT2Q9NPZ5 323 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 SERTM1A2A2V5 107 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 TAPBPO15533 448 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 HK1P19367 917 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 SLC5A2P31639 672 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 MPLP40238 635 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 PPICP45877 212 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 GANABQ14697 944 aaKnown RBP6.45□□□□□ -1.38
SF3B1-201ENST00000335508 ADPRMQ3LIE5 342 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 ZBED5Q49AG3 693 aa6.45□□□□□ -1.38
SF3B1-201ENST00000335508 GALNT5Q7Z7M9 940 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms