RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 GRIN2CQ14957 1233 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 SFRP4Q6FHJ7 346 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 Q6ZTK2 550 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 TPGS1Q6ZTW0 290 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 IZUMO1Q8IYV9 350 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 APCDD1Q8J025 514 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 OR5M3Q8NGP4 307 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 GOT1L1Q8NHS2 421 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 NEIL2Q969S2 332 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 SCRN2Q96FV2 425 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 ZNF578Q96N58 590 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 SARGQ9BW04 601 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 ZDHHC3Q9NYG2 299 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 CNIH4Q9P003 139 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 GULP1Q9UBP9 304 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 A4GNTQ9UNA3 340 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 PLXNA3P51805 1871 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 DNAH14Q0VDD8 3507 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 A0A0U1RQF3 1178 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 A0A1B0GVM2 712 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 ZC3H12DA2A288 527 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 MFSD2BA6NFX1 497 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 ANHXE9PGG2 379 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 TBL1XO60907 577 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 SLC16A8O95907 504 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 HLA-DPB1P04440 258 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 PRKAR2AP13861 404 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 BLVRAP53004 296 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 POLR2GP62487 172 aaKnown RBP eCLIP12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 OPCMLQ14982 345 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 AGTRAPQ6RW13 159 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 CRTC1Q6UUV9 634 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 SZRD1Q7Z422 152 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 ZNF467Q7Z7K2 595 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 MOSPD2Q8NHP6 518 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 GCDHQ92947 438 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 KCNK12Q9HB15 430 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 TNFRSF10DQ9UBN6 386 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 A0A1W2PPK0 400 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 MMP20O60882 483 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 SLC2A10O95528 541 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 URODP06132 367 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 SULT1A3P0DMM9 295 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 SULT1A4P0DMN0 295 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 CBSLP0DN79 551 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 CXCL2P19875 107 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 CBSP35520 551 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 CSKP41240 450 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 EFNB1P98172 346 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 ZNF763Q0D2J5 394 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 RAB40BQ12829 278 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 COL19A1Q14993 1142 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 SLC25A35Q3KQZ1 300 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 LILRB2Q8N423 598 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 C16orf78Q8WTQ4 265 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 ORAI3Q9BRQ5 295 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 SMG9Q9H0W8 520 aaKnown RBP12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 BRD9Q9H8M2 597 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 LYARQ9NX58 379 aaKnown RBP12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 HCSTQ9UBK5 93 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 CYB5R1Q9UHQ9 305 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 ADAM30Q9UKF2 790 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 FAM183AA6NL82 134 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 SYN3O14994 580 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 PRODHO43272 600 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 COCHO43405 550 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 SLC19A2O60779 497 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 B4GALT2O60909 372 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 ASGR1P07306 291 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 IL3P08700 152 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 H2AFB2P0C5Z0 115 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 LCN1P31025 176 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 DSG2Q14126 1118 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 SYPL1Q16563 259 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 TOMM5Q8N4H5 51 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 ZNF740Q8NDX6 193 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 HGDQ93099 445 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 FOPNLQ96NB1 174 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 OR2M2Q96R28 347 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 SEC22CQ9BRL7 303 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 FGF20Q9NP95 211 aaPredicted RBP12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 AP1M2Q9Y6Q5 423 aa12.65□□□□□ -0.38
CCDC88C-201ENST00000331194 CHURC1-FNTBB4DL54 471 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 ZNF593O00488 134 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 STC2O76061 302 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 WNT1P04628 370 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 ATP6V1E1P36543 226 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 HAAOP46952 286 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 RPS7P62081 194 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 CDK5Q00535 292 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 FZD5Q13467 585 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 MELKQ14680 651 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 NHLRC3Q5JS37 347 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 TCTE1Q5JU00 501 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 SLC30A6Q6NXT4 461 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 WASH2PQ6VEQ5 465 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 ZNF600Q6ZNG1 722 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 OR4D9Q8NGE8 314 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 CD99L2Q8TCZ2 262 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 SMAP2Q8WU79 429 aaPredicted RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms