RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 PSG6Q00889 435 aa17.75■□□□□ 0.43
LIME1-201ENST00000309546 ENPP6Q6UWR7 440 aa17.75■□□□□ 0.43
LIME1-201ENST00000309546 C10orf107Q8IVU9 208 aa17.75■□□□□ 0.43
LIME1-201ENST00000309546 TRIM42Q8IWZ5 723 aa17.75■□□□□ 0.43
LIME1-201ENST00000309546 GFM2Q969S9 779 aaKnown RBP17.75■□□□□ 0.43
LIME1-201ENST00000309546 DTNBP1Q96EV8 351 aa17.75■□□□□ 0.43
LIME1-201ENST00000309546 SH3GL2Q99962 352 aa17.75■□□□□ 0.43
LIME1-201ENST00000309546 GLIPR2Q9H4G4 154 aa17.75■□□□□ 0.43
LIME1-201ENST00000309546 ZNF629Q9UEG4 869 aaPredicted RBP17.75■□□□□ 0.43
LIME1-201ENST00000309546 A0A087WV62 115 aa17.74■□□□□ 0.43
LIME1-201ENST00000309546 MBD3L4A6NDZ8 208 aaPredicted RBP17.74■□□□□ 0.43
LIME1-201ENST00000309546 MBD3L3A6NE82 208 aaPredicted RBP17.74■□□□□ 0.43
LIME1-201ENST00000309546 MBD3L5A6NJ08 208 aaPredicted RBP17.74■□□□□ 0.43
LIME1-201ENST00000309546 EEF1E1-BLOC1S5C9J1V9 151 aa17.74■□□□□ 0.43
LIME1-201ENST00000309546 EEF1E1O43324 174 aaKnown RBP17.74■□□□□ 0.43
LIME1-201ENST00000309546 SRD5A2P31213 254 aa17.74■□□□□ 0.43
LIME1-201ENST00000309546 RFX3P48380 749 aa17.74■□□□□ 0.43
LIME1-201ENST00000309546 DGKQP52824 942 aa17.74■□□□□ 0.43
LIME1-201ENST00000309546 MRPS22P82650 360 aaKnown RBP17.74■□□□□ 0.43
LIME1-201ENST00000309546 PCLAFQ15004 111 aa17.74■□□□□ 0.43
LIME1-201ENST00000309546 IKBIPQ70UQ0 350 aa17.74■□□□□ 0.43
LIME1-201ENST00000309546 C9orf106Q8NAJ2 232 aa17.74■□□□□ 0.43
LIME1-201ENST00000309546 OR2W6PQ8NHA6 318 aa17.74■□□□□ 0.43
LIME1-201ENST00000309546 MBD3L2Q8NHZ7 208 aaPredicted RBP17.74■□□□□ 0.43
LIME1-201ENST00000309546 PUM2Q8TB72 1066 aaKnown RBP eCLIP17.74■□□□□ 0.43
LIME1-201ENST00000309546 NRGNQ92686 78 aa17.74■□□□□ 0.43
LIME1-201ENST00000309546 RNASE6Q93091 150 aaKnown RBP17.74■□□□□ 0.43
LIME1-201ENST00000309546 EGLN2Q96KS0 407 aa17.74■□□□□ 0.43
LIME1-201ENST00000309546 SFXN2Q96NB2 322 aa17.74■□□□□ 0.43
LIME1-201ENST00000309546 TUBA1CQ9BQE3 449 aa17.74■□□□□ 0.43
LIME1-201ENST00000309546 L2HGDHQ9H9P8 463 aa17.74■□□□□ 0.43
LIME1-201ENST00000309546 LRTM1Q9HBL6 345 aa17.74■□□□□ 0.43
LIME1-201ENST00000309546 CRIM1Q9NZV1 1036 aa17.74■□□□□ 0.43
LIME1-201ENST00000309546 PPP4R1LQ9P1A2 415 aa17.74■□□□□ 0.43
LIME1-201ENST00000309546 C19orf53Q9UNZ5 99 aaPredicted RBP17.74■□□□□ 0.43
LIME1-201ENST00000309546 RPH3AQ9Y2J0 694 aaPredicted RBP17.74■□□□□ 0.43
LIME1-201ENST00000309546 C17orf51A8MQB3 221 aa17.73■□□□□ 0.43
LIME1-201ENST00000309546 UPK1AO00322 258 aa17.73■□□□□ 0.43
LIME1-201ENST00000309546 SLC28A1O00337 649 aa17.73■□□□□ 0.43
LIME1-201ENST00000309546 SYT5O00445 386 aa17.73■□□□□ 0.43
LIME1-201ENST00000309546 AZIN1O14977 448 aa17.73■□□□□ 0.43
LIME1-201ENST00000309546 RGS14O43566 566 aa17.73■□□□□ 0.43
LIME1-201ENST00000309546 SLITRK5O94991 958 aa17.73■□□□□ 0.43
LIME1-201ENST00000309546 TMIGD3P0DMS9 266 aaPredicted RBP17.73■□□□□ 0.43
LIME1-201ENST00000309546 TACR1P25103 407 aa17.73■□□□□ 0.43
LIME1-201ENST00000309546 EVI2BP34910 448 aa17.73■□□□□ 0.43
LIME1-201ENST00000309546 STARP49675 285 aa17.73■□□□□ 0.43
LIME1-201ENST00000309546 SLC18A2Q05940 514 aa17.73■□□□□ 0.43
LIME1-201ENST00000309546 ANKRD26P1Q6NSI1 321 aa17.73■□□□□ 0.43
LIME1-201ENST00000309546 AAGABQ6PD74 315 aa17.73■□□□□ 0.43
LIME1-201ENST00000309546 POMZP3Q6PJE2 187 aa17.73■□□□□ 0.43
LIME1-201ENST00000309546 PLXDC2Q6UX71 529 aa17.73■□□□□ 0.43
LIME1-201ENST00000309546 OR4K17Q8NGC6 315 aa17.73■□□□□ 0.43
LIME1-201ENST00000309546 ZPLD1Q8TCW7 415 aa17.73■□□□□ 0.43
LIME1-201ENST00000309546 AMDHD1Q96NU7 426 aa17.73■□□□□ 0.43
LIME1-201ENST00000309546 GATA5Q9BWX5 397 aaPredicted RBP17.73■□□□□ 0.43
LIME1-201ENST00000309546 CALHM2Q9HA72 323 aa17.73■□□□□ 0.43
LIME1-201ENST00000309546 C1orf109Q9NX04 203 aa17.73■□□□□ 0.43
LIME1-201ENST00000309546 DNAJB12Q9NXW2 375 aaKnown RBP17.73■□□□□ 0.43
LIME1-201ENST00000309546 TAS2R7Q9NYW3 318 aa17.73■□□□□ 0.43
LIME1-201ENST00000309546 CBLCQ9ULV8 474 aa17.73■□□□□ 0.43
LIME1-201ENST00000309546 WBP11Q9Y2W2 641 aaKnown RBP17.73■□□□□ 0.43
LIME1-201ENST00000309546 CCL27Q9Y4X3 112 aa17.73■□□□□ 0.43
LIME1-201ENST00000309546 F8P00451 2351 aa17.72■□□□□ 0.43
LIME1-201ENST00000309546 CPN1P15169 458 aa17.72■□□□□ 0.43
LIME1-201ENST00000309546 CTSSP25774 331 aa17.72■□□□□ 0.43
LIME1-201ENST00000309546 DPP4P27487 766 aa17.72■□□□□ 0.43
LIME1-201ENST00000309546 PEX19P40855 299 aa17.72■□□□□ 0.43
LIME1-201ENST00000309546 GFRA1P56159 465 aa17.72■□□□□ 0.43
LIME1-201ENST00000309546 RPL38P63173 70 aaKnown RBP17.72■□□□□ 0.43
LIME1-201ENST00000309546 HSPB3Q12988 150 aa17.72■□□□□ 0.43
LIME1-201ENST00000309546 STX5Q13190 355 aa17.72■□□□□ 0.43
LIME1-201ENST00000309546 ZNHIT3Q15649 155 aaPredicted RBP17.72■□□□□ 0.43
LIME1-201ENST00000309546 DECR1Q16698 335 aa17.72■□□□□ 0.43
LIME1-201ENST00000309546 OR2L13Q8N349 312 aa17.72■□□□□ 0.43
LIME1-201ENST00000309546 OR2T11Q8NH01 316 aa17.72■□□□□ 0.43
LIME1-201ENST00000309546 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.72■□□□□ 0.433e-7■□□□□ 10.3
LIME1-201ENST00000309546 ELP4Q96EB1 424 aa17.72■□□□□ 0.43
LIME1-201ENST00000309546 APOPT1Q96IL0 206 aa17.72■□□□□ 0.43
LIME1-201ENST00000309546 GPATCH1Q9BRR8 931 aaKnown RBP17.72■□□□□ 0.43
LIME1-201ENST00000309546 POLDIP3Q9BY77 421 aaKnown RBP17.72■□□□□ 0.43
LIME1-201ENST00000309546 Q9N2J8 555 aa17.72■□□□□ 0.43
LIME1-201ENST00000309546 EQTNQ9NQ60 294 aa17.72■□□□□ 0.43
LIME1-201ENST00000309546 FLRT3Q9NZU0 649 aa17.72■□□□□ 0.43
LIME1-201ENST00000309546 CLCA1A8K7I4 914 aa17.71■□□□□ 0.43
LIME1-201ENST00000309546 PLOD2O00469 737 aa17.71■□□□□ 0.43
LIME1-201ENST00000309546 PDPK1O15530 556 aa17.71■□□□□ 0.43
LIME1-201ENST00000309546 AKAP10O43572 662 aa17.71■□□□□ 0.43
LIME1-201ENST00000309546 TRIM13O60858 407 aa17.71■□□□□ 0.43
LIME1-201ENST00000309546 CHEK2O96017 543 aa17.71■□□□□ 0.43
LIME1-201ENST00000309546 LINC00032P0C843 101 aa17.71■□□□□ 0.43
LIME1-201ENST00000309546 PRPH2P23942 346 aa17.71■□□□□ 0.43
LIME1-201ENST00000309546 GPC1P35052 558 aa17.71■□□□□ 0.43
LIME1-201ENST00000309546 OPRM1P35372 400 aa17.71■□□□□ 0.43
LIME1-201ENST00000309546 GAS1P54826 345 aa17.71■□□□□ 0.43
LIME1-201ENST00000309546 KIAA0040Q15053 153 aa17.71■□□□□ 0.43
LIME1-201ENST00000309546 FBXL19-AS1Q494R0 122 aa17.71■□□□□ 0.43
LIME1-201ENST00000309546 CYP27C1Q4G0S4 372 aa17.71■□□□□ 0.43
LIME1-201ENST00000309546 FLYWCH1Q4VC44 716 aa17.71■□□□□ 0.43
LIME1-201ENST00000309546 ZNF551Q7Z340 670 aaPredicted RBP17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms