RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 BLACEA4D250 179 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 EFCAB10A6NFE3 127 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 C4orf47A7E2U8 309 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 ARHGAP33O14559 1287 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 CDX4O14627 284 aaPredicted RBP15.73■□□□□ 0.11
CPSF4-201ENST00000292476 TOX3O15405 576 aaPredicted RBP15.73■□□□□ 0.11
CPSF4-201ENST00000292476 PRAMEF10O60809 474 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 LCKP06239 509 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 GPC1P35052 558 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 OR1D5P58170 312 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 TRIM16LQ309B1 348 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 SPDYE7PQ495Y7 208 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 SLC46A3Q7Z3Q1 461 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 MMP21Q8N119 569 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 ADAMTS18Q8TE60 1221 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 NAT6Q93015 286 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 UBE2FQ969M7 185 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 ZHX1-C8orf76Q96EF9 292 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 ALPK1Q96QP1 1244 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 DPYSL5Q9BPU6 564 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 NIPSNAP1Q9BPW8 284 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 MMP27Q9H306 513 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 FAM60AQ9NP50 221 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 TMEM9BQ9NQ34 198 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 ZNF226Q9NYT6 803 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 SH3GLB1Q9Y371 365 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 SNX8Q9Y5X2 465 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 DCHS1Q96JQ0 3298 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 SPTBN4Q9H254 2564 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 TP53BP1Q12888 1972 aaPredicted RBP15.73■□□□□ 0.11
CPSF4-201ENST00000292476 DNAH14Q0VDD8 3507 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 C5orf58C9J3I9 102 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 GALR3O60755 368 aaPredicted RBP15.73■□□□□ 0.11
CPSF4-201ENST00000292476 ERAL1O75616 437 aaKnown RBP15.73■□□□□ 0.11
CPSF4-201ENST00000292476 ADAP00813 363 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 PORP16435 677 aaPredicted RBP15.73■□□□□ 0.11
CPSF4-201ENST00000292476 OR1E2P47887 323 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 LIM2P55344 173 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 NCS1P62166 190 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 HSD11B2P80365 405 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 SQSTM1Q13501 440 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 FAM53BQ14153 422 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 CEBPEQ15744 281 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 TIGD6Q17RP2 521 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 PRSS53Q2L4Q9 553 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 PRTGQ2VWP7 1150 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 COLEC12Q5KU26 742 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 TMEM64Q6YI46 380 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 USP43Q70EL4 1123 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 ZNF367Q7RTV3 350 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 CCDC103Q8IW40 242 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 KBTBD8Q8NFY9 601 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 ITPKCQ96DU7 683 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 DHRS1Q96LJ7 313 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 ZNF285Q96NJ3 590 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 RLIMQ9NVW2 624 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 CCDC59Q9P031 241 aaKnown RBP15.73■□□□□ 0.11
CPSF4-201ENST00000292476 KCMF1Q9P0J7 381 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 SEMA5BQ9P283 1151 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 FTSJ1Q9UET6 329 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 CES1P1Q9UKY3 287 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 PMF1-BGLAPU3KQ54 211 aa15.73■□□□□ 0.11
CPSF4-201ENST00000292476 NUP214P35658 2090 aaPredicted RBP15.72■□□□□ 0.11
CPSF4-201ENST00000292476 KNL1Q8NG31 2342 aa15.72■□□□□ 0.11
CPSF4-201ENST00000292476 TMEM131Q92545 1883 aa15.72■□□□□ 0.11
CPSF4-201ENST00000292476 MN1Q10571 1320 aaPredicted RBP15.72■□□□□ 0.11
CPSF4-201ENST00000292476 DSPPQ9NZW4 1301 aa15.72■□□□□ 0.11
CPSF4-201ENST00000292476 ZAR1LA6NP61 321 aa15.72■□□□□ 0.11
CPSF4-201ENST00000292476 AIREO43918 545 aa15.72■□□□□ 0.11
CPSF4-201ENST00000292476 PIPP12273 146 aaPredicted RBP15.72■□□□□ 0.11
CPSF4-201ENST00000292476 TNFRSF1BP20333 461 aa15.72■□□□□ 0.11
CPSF4-201ENST00000292476 CD40LGP29965 261 aa15.72■□□□□ 0.11
CPSF4-201ENST00000292476 ID4P47928 161 aa15.72■□□□□ 0.11
CPSF4-201ENST00000292476 CLK1P49759 484 aaKnown RBP15.72■□□□□ 0.11
CPSF4-201ENST00000292476 NCBP2P52298 156 aaKnown RBP eCLIP15.72■□□□□ 0.11
CPSF4-201ENST00000292476 SMIM11AP58511 58 aa15.72■□□□□ 0.11
CPSF4-201ENST00000292476 ATP1A4Q13733 1029 aa15.72■□□□□ 0.11
CPSF4-201ENST00000292476 ZNF770Q6IQ21 691 aaPredicted RBP15.72■□□□□ 0.11
CPSF4-201ENST00000292476 CEACAM20Q6UY09 585 aa15.72■□□□□ 0.11
CPSF4-201ENST00000292476 PRSS42Q7Z5A4 293 aa15.72■□□□□ 0.11
CPSF4-201ENST00000292476 ZBTB46Q86UZ6 589 aa15.72■□□□□ 0.11
CPSF4-201ENST00000292476 SLC44A2Q8IWA5 706 aaPredicted RBP15.72■□□□□ 0.11
CPSF4-201ENST00000292476 OR4K14Q8NGD5 310 aa15.72■□□□□ 0.11
CPSF4-201ENST00000292476 OR5AK3PQ8NH89 298 aa15.72■□□□□ 0.11
CPSF4-201ENST00000292476 SFXN5Q8TD22 340 aa15.72■□□□□ 0.11
CPSF4-201ENST00000292476 SNRNP27Q8WVK2 155 aaKnown RBP15.72■□□□□ 0.11
CPSF4-201ENST00000292476 AMDHD1Q96NU7 426 aa15.72■□□□□ 0.11
CPSF4-201ENST00000292476 CDCA4Q9BXL8 241 aa15.72■□□□□ 0.11
CPSF4-201ENST00000292476 ENAMQ9NRM1 1142 aa15.72■□□□□ 0.11
CPSF4-201ENST00000292476 NDOR1Q9UHB4 597 aa15.72■□□□□ 0.11
CPSF4-201ENST00000292476 M0R082 166 aa15.71■□□□□ 0.11
CPSF4-201ENST00000292476 TAF4O00268 1085 aa15.71■□□□□ 0.11
CPSF4-201ENST00000292476 PGRMC2O15173 223 aa15.71■□□□□ 0.11
CPSF4-201ENST00000292476 SH3BP5O60239 455 aa15.71■□□□□ 0.11
CPSF4-201ENST00000292476 SLITRK5O94991 958 aa15.71■□□□□ 0.11
CPSF4-201ENST00000292476 RECKO95980 971 aa15.71■□□□□ 0.11
CPSF4-201ENST00000292476 RPLP0P05388 317 aaKnown RBP15.71■□□□□ 0.11
CPSF4-201ENST00000292476 MSL3P1P0C860 447 aa15.71■□□□□ 0.11
CPSF4-201ENST00000292476 BMP4P12644 408 aa15.71■□□□□ 0.11
CPSF4-201ENST00000292476 PPP2R1BP30154 601 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms