RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 STRADBQ9C0K7 418 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 IFT80Q9P2H3 777 aaPredicted RBP13.11□□□□□ -0.31
SS18-201ENST00000269137 NCDNQ9UBB6 729 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 CLCA3PQ9Y6N3 262 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 KNTC1P50748 2209 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 DLGAP1O14490 977 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 ADAMDEC1O15204 470 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 DNAJB5O75953 348 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 DIRAS1O95057 198 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 LGI1O95970 557 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 HPRP00739 348 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 IGKV3-11P04433 115 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 CYC1P08574 325 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 PABPC4LP0CB38 370 aaKnown RBP13.11□□□□□ -0.31
SS18-201ENST00000269137 RHCEP18577 417 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 FPR1P21462 350 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 PRKAR1BP31321 381 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 ALDH3A2P51648 485 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 INSM1Q01101 510 aaPredicted RBP13.11□□□□□ -0.31
SS18-201ENST00000269137 DAG1Q14118 895 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 CYP27C1Q4G0S4 372 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 DHRS4L2Q6PKH6 230 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 TMEM179BQ7Z7N9 219 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 STK32CQ86UX6 486 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 PRSS58Q8IYP2 241 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 OR14A16Q8NHC5 309 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 C16orf52Q8NHV5 167 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 PIK3R3Q92569 461 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 DAZLQ92904 295 aaKnown RBP13.11□□□□□ -0.31
SS18-201ENST00000269137 ZG16BQ96DA0 208 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 EPYCQ99645 322 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 OSBPL11Q9BXB4 747 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 IRF2BPLQ9H1B7 796 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 Q9H521 79 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 TRIM45Q9H8W5 580 aaPredicted RBP13.11□□□□□ -0.31
SS18-201ENST00000269137 REEP1Q9H902 201 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 USE1Q9NZ43 259 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 IFT52Q9Y366 437 aa13.11□□□□□ -0.31
SS18-201ENST00000269137 SAMHD1Q9Y3Z3 626 aaKnown RBP13.11□□□□□ -0.31
SS18-201ENST00000269137 MUC6Q6W4X9 2439 aa13.1□□□□□ -0.31
SS18-201ENST00000269137 DENRO43583 198 aaKnown RBP13.1□□□□□ -0.31
SS18-201ENST00000269137 GDF9O60383 454 aa13.1□□□□□ -0.31
SS18-201ENST00000269137 FOXD2O60548 495 aaPredicted RBP13.1□□□□□ -0.31
SS18-201ENST00000269137 DDAH2O95865 285 aa13.1□□□□□ -0.31
SS18-201ENST00000269137 ALPLP05186 524 aa13.1□□□□□ -0.31
SS18-201ENST00000269137 AGXTP21549 392 aa13.1□□□□□ -0.31
SS18-201ENST00000269137 TRHRP34981 398 aaPredicted RBP13.1□□□□□ -0.31
SS18-201ENST00000269137 ARHGDIAP52565 204 aa13.1□□□□□ -0.31
SS18-201ENST00000269137 SLC37A1P57057 533 aa13.1□□□□□ -0.31
SS18-201ENST00000269137 GK3PQ14409 553 aa13.1□□□□□ -0.31
SS18-201ENST00000269137 NHSL2Q5HYW2 709 aa13.1□□□□□ -0.31
SS18-201ENST00000269137 ZNF311Q5JNZ3 666 aa13.1□□□□□ -0.31
SS18-201ENST00000269137 OTUD3Q5T2D3 398 aaPredicted RBP13.1□□□□□ -0.31
SS18-201ENST00000269137 PIP4P1Q86T03 277 aa13.1□□□□□ -0.31
SS18-201ENST00000269137 CARM1Q86X55 608 aa13.1□□□□□ -0.31
SS18-201ENST00000269137 PEX5LQ8IYB4 626 aa13.1□□□□□ -0.31
SS18-201ENST00000269137 ZNF619Q8N2I2 560 aa13.1□□□□□ -0.31
SS18-201ENST00000269137 ART5Q96L15 291 aa13.1□□□□□ -0.31
SS18-201ENST00000269137 SLC46A1Q96NT5 459 aa13.1□□□□□ -0.31
SS18-201ENST00000269137 PIP5K1AQ99755 562 aa13.1□□□□□ -0.31
SS18-201ENST00000269137 RBM4BQ9BQ04 359 aaKnown RBP13.1□□□□□ -0.31
SS18-201ENST00000269137 RBM4Q9BWF3 364 aaKnown RBP13.1□□□□□ -0.31
SS18-201ENST00000269137 GABARAPL1Q9H0R8 117 aa13.1□□□□□ -0.31
SS18-201ENST00000269137 SLC39A1Q9NY26 324 aa13.1□□□□□ -0.31
SS18-201ENST00000269137 MKLN1Q9UL63 735 aa13.1□□□□□ -0.31
SS18-201ENST00000269137 CFL2Q9Y281 166 aa13.1□□□□□ -0.31
SS18-201ENST00000269137 SLC9A8Q9Y2E8 581 aa13.1□□□□□ -0.31
SS18-201ENST00000269137 FAM32AQ9Y421 112 aaKnown RBP13.1□□□□□ -0.31
SS18-201ENST00000269137 MAGED1Q9Y5V3 778 aaPredicted RBP13.1□□□□□ -0.31
SS18-201ENST00000269137 GXYLT2A0PJZ3 443 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 AGAP5A6NIR3 686 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 KIAA0513O60268 411 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 BRINP1O60477 761 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 KCNK2O95069 426 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 EPPINO95925 133 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 THBS1P07996 1170 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 CT45A8P0DMV1 189 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 CT45A9P0DMV2 189 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 RPS4Y1P22090 263 aaKnown RBP13.09□□□□□ -0.31
SS18-201ENST00000269137 NBL1P41271 181 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 HMGA2P52926 109 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 RAB15P59190 212 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 PPP2R2BQ00005 443 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 ISXQ2M1V0 245 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 CT45A2Q5DJT8 189 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 CCNJQ5T5M9 372 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 MRPL14Q6P1L8 145 aaKnown RBP13.09□□□□□ -0.31
SS18-201ENST00000269137 ZNF605Q86T29 641 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 OR52P1PQ8NH57 321 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 SLC2A12Q8TD20 617 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 MAGEE2Q8TD90 523 aaPredicted RBP13.09□□□□□ -0.31
SS18-201ENST00000269137 ZNF721Q8TF20 911 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 RNF31Q96EP0 1072 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 QRSL1Q9H0R6 528 aaKnown RBP13.09□□□□□ -0.31
SS18-201ENST00000269137 CACYBPQ9HB71 228 aaKnown RBP13.09□□□□□ -0.31
SS18-201ENST00000269137 KCND3Q9UK17 655 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 ZNF232Q9UNY5 417 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 DTX4Q9Y2E6 619 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 AP4B1Q9Y6B7 739 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 U3KQV3 271 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms