RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 FUT1P19526 365 aa13.52□□□□□ -0.25
SDC1-201ENST00000254351 PITPNBP48739 271 aa13.52□□□□□ -0.25
SDC1-201ENST00000254351 VEGFBP49765 207 aa13.52□□□□□ -0.25
SDC1-201ENST00000254351 PCBP3P57721 371 aaKnown RBP13.52□□□□□ -0.25
SDC1-201ENST00000254351 ATRAIDQ6UW56 229 aa13.52□□□□□ -0.25
SDC1-201ENST00000254351 RTN4RL1Q86UN2 441 aaPredicted RBP13.52□□□□□ -0.25
SDC1-201ENST00000254351 SERPINA12Q8IW75 414 aa13.52□□□□□ -0.25
SDC1-201ENST00000254351 TMEM159Q96B96 161 aa13.52□□□□□ -0.25
SDC1-201ENST00000254351 AUNIPQ9H7T9 357 aa13.52□□□□□ -0.25
SDC1-201ENST00000254351 TAAR2Q9P1P5 351 aa13.52□□□□□ -0.25
SDC1-201ENST00000254351 TRBV5-4A0A0C4DH59 114 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 ZNF840PA6NDX5 716 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 SNRPBP14678 240 aaKnown RBP13.51□□□□□ -0.25
SDC1-201ENST00000254351 AHCYP23526 432 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 IMPA1P29218 277 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 LCN1P31025 176 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 BLVRAP53004 296 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 ERVK-21P61565 698 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 TPBGQ13641 420 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 COL28A1Q2UY09 1125 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 GPR33Q49SQ1 333 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 SPIN4Q56A73 249 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 FAM26EQ8N5C1 309 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 TREX2Q9BQ50 279 aaPredicted RBP13.51□□□□□ -0.25
SDC1-201ENST00000254351 SOSTQ9BQB4 213 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 BHLHE41Q9C0J9 482 aaPredicted RBP13.51□□□□□ -0.25
SDC1-201ENST00000254351 BRD7Q9NPI1 651 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 EQTNQ9NQ60 294 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 DLL4Q9NR61 685 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 TDRD15B5MCY1 1934 aaKnown RBP13.51□□□□□ -0.25
SDC1-201ENST00000254351 SPTBP11277 2137 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 PRR23D1E9PI22 279 aaPredicted RBP13.51□□□□□ -0.25
SDC1-201ENST00000254351 MID1O15344 667 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 TPPPO94811 219 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 HLA-DQB1P01920 261 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 PRR23D2P0DMB1 279 aaPredicted RBP13.51□□□□□ -0.25
SDC1-201ENST00000254351 OR1D2P34982 312 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 SP3Q02447 781 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 NDUFAF5Q5TEU4 345 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 PRICKLE2Q7Z3G6 844 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 C6orf120Q7Z4R8 191 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 TRMT10AQ8TBZ6 339 aaKnown RBP13.51□□□□□ -0.25
SDC1-201ENST00000254351 SEC22CQ9BRL7 303 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 TMEM38AQ9H6F2 299 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 ADAM30Q9UKF2 790 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 NLRC5Q86WI3 1866 aa13.51□□□□□ -0.25
SDC1-201ENST00000254351 SGK494L7N484 410 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 SYN3O14994 580 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 MAZP56270 477 aaKnown RBP13.5□□□□□ -0.25
SDC1-201ENST00000254351 UBE2MP61081 183 aaKnown RBP13.5□□□□□ -0.25
SDC1-201ENST00000254351 TBPL1P62380 186 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 OCLNQ16625 522 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 PIP5KL1Q5T9C9 394 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 KIAA1841Q6NSI8 718 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 Q6ZTK2 550 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 RADILQ96JH8 1075 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 POLDIP3Q9BY77 421 aaKnown RBP13.5□□□□□ -0.25
SDC1-201ENST00000254351 SMG9Q9H0W8 520 aaKnown RBP13.5□□□□□ -0.25
SDC1-201ENST00000254351 RNF186Q9NXI6 227 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 B4GALT6Q9UBX8 382 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 BAIAP2Q9UQB8 552 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 RANBP2P49792 3224 aaKnown RBP13.5□□□□□ -0.25
SDC1-201ENST00000254351 CACNA1CQ13936 2221 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 PRODHO43272 600 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 ZNF623O75123 536 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 SRPRAP08240 638 aaKnown RBP13.5□□□□□ -0.25
SDC1-201ENST00000254351 H2AFB2P0C5Z0 115 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 PSMA3P25788 255 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 SERPINA4P29622 427 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 ACSL1P33121 698 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 VEGFCP49767 419 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 ZP1P60852 638 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 DEFA5Q01523 94 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 CDKN3Q16667 212 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 C3orf38Q5JPI3 329 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 TCTE1Q5JU00 501 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 CLLU1Q5K131 121 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 TMEM201Q5SNT2 666 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 GRHL2Q6ISB3 625 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 SLC25A25Q6KCM7 469 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 SLC27A4Q6P1M0 643 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 ZNF613Q6PF04 617 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 SLC36A4Q6YBV0 504 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 RNF165Q6ZSG1 346 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 OR10H4Q8NGA5 316 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 ASZ1Q8WWH4 475 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 SGTBQ96EQ0 304 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 TEFMQ96QE5 360 aaKnown RBP13.5□□□□□ -0.25
SDC1-201ENST00000254351 FAIM2Q9BWQ8 316 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 MTG2Q9H4K7 406 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 ELAC1Q9H777 363 aaKnown RBP13.5□□□□□ -0.25
SDC1-201ENST00000254351 WSB2Q9NYS7 404 aaPredicted RBP13.5□□□□□ -0.25
SDC1-201ENST00000254351 A4GNTQ9UNA3 340 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 COPS3Q9UNS2 423 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 HRH3Q9Y5N1 445 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 TRDV1A0A1B0GX56 115 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 SLC9B1P1A6NJY1 282 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 E9PI62 339 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 GFYI3L273 518 aa13.5□□□□□ -0.25
SDC1-201ENST00000254351 B4GALT2O60909 372 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms