RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 ZNF532Q9HCE3 1301 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 WDR87Q6ZQQ6 2873 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 KDM4FA0A1W2PPD8 638 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ERVH48-1M5A8F1 160 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 EI24O14681 340 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 AZIN1O14977 448 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 SURF4O15260 269 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF780AO75290 641 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 TNFRSF1AP19438 455 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 KDELR2P33947 212 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 RAB11AP62491 216 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 SMAD3P84022 425 aaKnown RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 SYVN1Q86TM6 617 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 AQP12AQ8IXF9 295 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 SYT14Q8NB59 555 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 OR1E3Q8WZA6 343 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF479Q96JC4 524 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 HSFY1Q96LI6 401 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 CRAMP1Q96RY5 1269 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 PLEKHA1Q9HB21 404 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 HYKKA2RU49 373 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 GPX5O75715 221 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 CSN2P05814 226 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 MMP10P09238 476 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 AKR1C3P42330 323 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 OR3A2P47893 321 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 IDH2P48735 452 aaKnown RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 C2orf80Q0P641 193 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 SMIM21Q3B7S5 101 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 RNASE10Q5GAN6 216 aaKnown RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 FIGLAQ6QHK4 219 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 SPNS3Q6ZMD2 512 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 SLC26A9Q7LBE3 791 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 SYT9Q86SS6 491 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 GPAT4Q86UL3 456 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 WDFY1Q8IWB7 410 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 TOP6BLQ8N6T0 577 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 SFXN5Q8TD22 340 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 NRG4Q8WWG1 115 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 MRGPRX4Q96LA9 322 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 SOX7Q9BT81 388 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 NELFAQ9H3P2 528 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 GEMIN7Q9H840 131 aaKnown RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 LTB4R2Q9NPC1 389 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 GPR173Q9NS66 373 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 CLEC2DQ9UHP7 191 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 OR10H1Q9Y4A9 318 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF716A6NP11 495 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 LGALS8O00214 317 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 BANF1O75531 89 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 DFFBO76075 338 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 NKX2-2O95096 273 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 FADS2O95864 444 aaKnown RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 FTH1P02794 183 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF735P0CB33 412 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 EPHA3P29320 983 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 HOXA9P31269 272 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 THBS3P49746 956 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 C9orf50Q5SZB4 431 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 DESI1Q6ICB0 168 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 TMEM211Q6ICI0 200 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 KYAT3Q6YP21 454 aaKnown RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 WDR53Q7Z5U6 358 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 TFAP2DQ7Z6R9 452 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 SVBPQ8N300 66 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 EID2Q8N6I1 236 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 OR4E2Q8NGC2 313 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 CPA5Q8WXQ8 436 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ERGIC1Q969X5 290 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 SFRP2Q96HF1 295 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 TMPRSS5Q9H3S3 457 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 TICRRQ7Z2Z1 1910 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 KRBOX1C9JBD0 128 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 EIF1BO60739 113 aaKnown RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 THP07101 528 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 DAOP14920 347 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF250P15622 560 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 EIF1P41567 113 aaKnown RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 BAG6P46379 1132 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 RGS4P49798 205 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 NAB2Q15742 525 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 TMPRSS11FQ6ZWK6 438 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 LHFPL3Q86UP9 236 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 LDHDQ86WU2 507 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 TCTE3Q8IZS6 198 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 C8orf59Q8N0T1 100 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 TOE1Q96GM8 510 aaKnown RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 RSRP1Q9BUV0 290 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 CAPN6Q9Y6Q1 641 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 OR5K3A6NET4 321 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 C17orf105B2RV13 164 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 E5RGE8 158 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 BET1O15155 118 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 GPR37L1O60883 481 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 SLITRK3O94933 977 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 PTPN4P29074 926 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ARL4AP40617 200 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 CDK6Q00534 326 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 IL5RAQ01344 420 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 COX20Q5RI15 118 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms