RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 OR2L2Q8NH16 312 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 OR56A3Q8NH54 315 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 C11orf40Q8WZ69 217 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 S100PBPQ96BU1 408 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 STRA6Q9BX79 667 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 OR51V1Q9H2C8 321 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 CALHM2Q9HA72 323 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 ARMCX1Q9P291 453 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 KLHL9Q9P2J3 617 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 VDAC3Q9Y277 283 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 DLGAP4Q9Y2H0 992 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 PCDHGA3Q9Y5H0 932 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 NKX6-3A6NJ46 265 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF587BE7ETH6 402 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 EIF3FO00303 357 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-218ENST00000640036 OR2T1O43869 369 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 LILRB5O75023 590 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 CDKN2BP42772 138 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 HERVK_113P63132 956 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 ERVK-8P63133 956 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 NRG1Q02297 640 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF763Q0D2J5 394 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 RPE65Q16518 533 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 BCL2A1Q16548 175 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 TYSND1Q2T9J0 566 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 C9orf152Q5JTZ5 239 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 GUSBP11Q6P575 273 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 MISPQ8IVT2 679 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 VWA5B2Q8N398 1253 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 DHRSXQ8N5I4 330 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 ENDOVQ8N8Q3 282 aaKnown RBP4.75□□□□□ -1.65
SCN1A-218ENST00000640036 C22orf15Q8WYQ4 148 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 CCDC115Q96NT0 180 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 IL17FQ96PD4 163 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 ERVK-6Q9BXR3 956 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 CHST8Q9H2A9 424 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 DENND2DQ9H6A0 471 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-218ENST00000640036 UBTD1Q9HAC8 227 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 GPATCH2Q9NW75 528 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 ERVK-19Q9WJR5 959 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 RAP2CQ9Y3L5 183 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 PKD1L3Q7Z443 1732 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 CPSF4LA6NMK7 179 aaKnown RBP4.75□□□□□ -1.65
SCN1A-218ENST00000640036 NPIPA7E9PJI5 369 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 NPIPA8P0DM63 369 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 EIF1P41567 113 aaKnown RBP4.75□□□□□ -1.65
SCN1A-218ENST00000640036 CARD18P57730 90 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 SNAPC1Q16533 368 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 NXPE4Q6UWF7 544 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 SLC47A1Q96FL8 570 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 ELOVL3Q9HB03 270 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 CARD8Q9Y2G2 431 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 YARS2Q9Y2Z4 477 aaKnown RBP4.75□□□□□ -1.65
SCN1A-218ENST00000640036 STRCP1A6NGW2 1772 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 EMC8O43402 210 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 TSC22D2O75157 780 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 IL1AP01583 271 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 HCKP08631 526 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 NME1P15531 152 aaKnown RBP4.75□□□□□ -1.65
SCN1A-218ENST00000640036 CSRP1P21291 193 aaKnown RBP4.75□□□□□ -1.65
SCN1A-218ENST00000640036 SPOCK1Q08629 439 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 USF2Q15853 346 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-218ENST00000640036 IER5LQ5T953 404 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 ADAMTSL4Q6UY14 1074 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 PLPP6Q8IY26 295 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 CMTM4Q8IZR5 234 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF540Q8NDQ6 660 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 EPS8L3Q8TE67 593 aaKnown RBP4.75□□□□□ -1.65
SCN1A-218ENST00000640036 UBASH3BQ8TF42 649 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 PGAM5Q96HS1 289 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 NSL1Q96IY1 281 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 SLC30A3Q99726 388 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 GPATCH1Q9BRR8 931 aaKnown RBP4.75□□□□□ -1.65
SCN1A-218ENST00000640036 MND1Q9BWT6 205 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 MOV10Q9HCE1 1003 aaKnown RBP4.75□□□□□ -1.65
SCN1A-218ENST00000640036 SLC35C2Q9NQQ7 365 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 ANKRD10Q9NXR5 420 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 MKLN1Q9UL63 735 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 A0A0G2JPF8 293 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 FADS2P1A8MWK0 482 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 HNRNPCL3B7ZW38 293 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 HHLA1C9JL84 531 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 OR4F21O95013 312 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 C8BP07358 591 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 HNRNPCL4P0DMR1 293 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 PVRP15151 417 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 DCTP40126 519 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 ERVPABLB-1P60509 514 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 ADAM8P78325 824 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 C17orf67Q0P5P2 114 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 ARFRP1Q13795 201 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 RGS21Q2M5E4 152 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 PAMR1Q6UXH9 720 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 MAMDC2Q7Z304 686 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-218ENST00000640036 SMIM15Q7Z3B0 74 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 LAPTM4BQ86VI4 370 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 OR4N5Q8IXE1 308 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 IQCF2Q8IXL9 164 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 DCBLD1Q8N8Z6 715 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 LRRC20Q8TCA0 184 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 314.3 ms