RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-228ENST00000637325 ELAVL4P26378 380 aaKnown RBP12.63□□□□□ -0.39
PNKP-228ENST00000637325 CHRNB4P30926 498 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 GPC1P35052 558 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 SERPINB5P36952 375 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 MC3RP41968 323 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 CORO7P57737 925 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 ZNF844Q08AG5 666 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 SNTA1Q13424 505 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 EFR3AQ14156 821 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 CDSNQ15517 529 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 PRSS53Q2L4Q9 553 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 CT45A2Q5DJT8 189 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 C1orf185Q5T7R7 199 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 TIGD3Q6B0B8 471 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 DESI1Q6ICB0 168 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 RNF165Q6ZSG1 346 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 LARP4Q71RC2 724 aaKnown RBP eCLIP12.63□□□□□ -0.39
PNKP-228ENST00000637325 NUDCD3Q8IVD9 361 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 SLC44A2Q8IWA5 706 aaPredicted RBP12.63□□□□□ -0.39
PNKP-228ENST00000637325 RPRMLQ8N4K4 120 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 OR2T11Q8NH01 316 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 EGLN2Q96KS0 407 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 VSTM2LQ96N03 204 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 AMDHD1Q96NU7 426 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 TSSK3Q96PN8 268 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 ADOQ96SZ5 270 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 CCT7Q99832 543 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 TUBB1Q9H4B7 451 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 GLIPR2Q9H4G4 154 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 DDX18Q9NVP1 670 aaKnown RBP12.63□□□□□ -0.39
PNKP-228ENST00000637325 SH3BP4Q9P0V3 963 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 C15orf41Q9Y2V0 281 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 TMED5Q9Y3A6 229 aa12.63□□□□□ -0.39
PNKP-228ENST00000637325 MPDZO75970 2070 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 A0A087WV62 115 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 C2orf72A6NCS6 295 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 FAM90A27PA6NNH2 459 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 TMEM233B4DJY2 109 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 PIP5K1BO14986 540 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 LSM1O15116 133 aaKnown RBP12.62□□□□□ -0.39
PNKP-228ENST00000637325 PDPK1O15530 556 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 HPNP05981 417 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 TUBBP07437 444 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 BPGMP07738 259 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 HOXD4P09016 255 aaPredicted RBP12.62□□□□□ -0.39
PNKP-228ENST00000637325 DDX5P17844 614 aaKnown RBP12.62□□□□□ -0.39
PNKP-228ENST00000637325 ENDOUP21128 410 aaKnown RBP12.62□□□□□ -0.39
PNKP-228ENST00000637325 MAPK1P28482 360 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 GCKP35557 465 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 ASMTP46597 345 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 CDK9P50750 372 aaKnown RBP12.62□□□□□ -0.39
PNKP-228ENST00000637325 MRPS22P82650 360 aaKnown RBP12.62□□□□□ -0.39
PNKP-228ENST00000637325 ZNHIT3Q15649 155 aaPredicted RBP12.62□□□□□ -0.39
PNKP-228ENST00000637325 RFTN2Q52LD8 501 aaPredicted RBP12.62□□□□□ -0.39
PNKP-228ENST00000637325 ANKRD26P1Q6NSI1 321 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 TMEM81Q6P7N7 255 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 CCDC71Q8IV32 467 aaPredicted RBP12.62□□□□□ -0.39
PNKP-228ENST00000637325 MCEMP1Q8IX19 187 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 CLHC1Q8NHS4 586 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 ZFP28Q8NHY6 868 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 PPCDCQ96CD2 204 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 ELP4Q96EB1 424 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 SLC35A4Q96G79 324 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 PPP3R2Q96LZ3 170 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 TTYH2Q9BSA4 534 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 REEP4Q9H6H4 257 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 GALNT9Q9HCQ5 603 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 BAIAP2L1Q9UHR4 511 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 RAB21Q9UL25 225 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 C19orf53Q9UNZ5 99 aaPredicted RBP12.62□□□□□ -0.39
PNKP-228ENST00000637325 MAPRE3Q9UPY8 281 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 EXO1Q9UQ84 846 aaKnown RBP12.62□□□□□ -0.39
PNKP-228ENST00000637325 MED12LQ86YW9 2145 aa12.62□□□□□ -0.39
PNKP-228ENST00000637325 WDR91A4D1P6 747 aa12.61□□□□□ -0.39
PNKP-228ENST00000637325 TMEM114B3SHH9 223 aa12.61□□□□□ -0.39
PNKP-228ENST00000637325 FAM47E-STBD1D6RA91 191 aa12.61□□□□□ -0.39
PNKP-228ENST00000637325 C19orf84I3L1E1 186 aa12.61□□□□□ -0.39
PNKP-228ENST00000637325 PLOD2O00469 737 aa12.61□□□□□ -0.39
PNKP-228ENST00000637325 SNPHO15079 494 aa12.61□□□□□ -0.39
PNKP-228ENST00000637325 TYROBPO43914 113 aa12.61□□□□□ -0.39
PNKP-228ENST00000637325 TSPAN2O60636 221 aa12.61□□□□□ -0.39
PNKP-228ENST00000637325 MYZAPP0CAP1 466 aa12.61□□□□□ -0.39
PNKP-228ENST00000637325 GLI4P10075 376 aa12.61□□□□□ -0.39
PNKP-228ENST00000637325 SDC1P18827 310 aa12.61□□□□□ -0.39
PNKP-228ENST00000637325 PTPN6P29350 595 aa12.61□□□□□ -0.39
PNKP-228ENST00000637325 PTGER4P35408 488 aa12.61□□□□□ -0.39
PNKP-228ENST00000637325 MANFP55145 182 aaKnown RBP12.61□□□□□ -0.39
PNKP-228ENST00000637325 HSPB3Q12988 150 aa12.61□□□□□ -0.39
PNKP-228ENST00000637325 UGT3A2Q3SY77 523 aa12.61□□□□□ -0.39
PNKP-228ENST00000637325 ATP6AP1LQ52LC2 224 aa12.61□□□□□ -0.39
PNKP-228ENST00000637325 EIPR1Q53HC9 387 aa12.61□□□□□ -0.39
PNKP-228ENST00000637325 CEP85LQ5SZL2 805 aa12.61□□□□□ -0.39
PNKP-228ENST00000637325 FNDC7Q5VTL7 733 aa12.61□□□□□ -0.39
PNKP-228ENST00000637325 NPSR1Q6W5P4 371 aa12.61□□□□□ -0.39
PNKP-228ENST00000637325 ZNF551Q7Z340 670 aaPredicted RBP12.61□□□□□ -0.39
PNKP-228ENST00000637325 YRDCQ86U90 279 aaKnown RBP12.61□□□□□ -0.39
PNKP-228ENST00000637325 LILRB4Q8NHJ6 448 aa12.61□□□□□ -0.39
PNKP-228ENST00000637325 CIDECQ96AQ7 238 aaPredicted RBP12.61□□□□□ -0.39
PNKP-228ENST00000637325 EFHD2Q96C19 240 aaPredicted RBP12.61□□□□□ -0.39
PNKP-228ENST00000637325 DTNBP1Q96EV8 351 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms