RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 HBQ1P09105 142 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 OPN1MW2P0DN77 364 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 OPN1MW3P0DN78 364 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 SLC2A3P11169 496 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 PEPDP12955 493 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 LYL1P12980 280 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 ZNF24P17028 368 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 XRCC1P18887 633 aaPredicted RBP3.96□□□□□ -1.78
LINC00540-201ENST00000611481 CCNA2P20248 432 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 PON1P27169 355 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 PSMA5P28066 241 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 ARRB2P32121 409 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 CCR1P32246 355 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 GJC1P36383 396 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 GABRB2P47870 512 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 COMPP49747 757 aaPredicted RBP3.96□□□□□ -1.78
LINC00540-201ENST00000611481 KHKP50053 298 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 ATP5J2P56134 94 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 TAS2R50P59544 299 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 GMFBP60983 142 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 RHOAP61586 193 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 DCDP81605 110 aaKnown RBP3.96□□□□□ -1.78
LINC00540-201ENST00000611481 GNA12Q03113 381 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 MRPL28Q13084 256 aaKnown RBP3.96□□□□□ -1.78
LINC00540-201ENST00000611481 KPNB1Q14974 876 aaKnown RBP3.96□□□□□ -1.78
LINC00540-201ENST00000611481 TRADDQ15628 312 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 ACKR1Q16570 336 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 TFDP3Q5H9I0 405 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 ETFRF1Q6IPR1 90 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 KRTAP5-4Q6L8H1 288 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 PMF1Q6P1K2 205 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 TMEM88Q6PEY1 159 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 TMEM270Q6UE05 265 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 C16orf89Q6UX73 402 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 SHISA6Q6ZSJ9 500 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 SLC13A5Q86YT5 568 aaPredicted RBP3.96□□□□□ -1.78
LINC00540-201ENST00000611481 IQCF1Q8N6M8 205 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 TSPAN14Q8NG11 270 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 PTPMT1Q8WUK0 201 aaPredicted RBP3.96□□□□□ -1.78
LINC00540-201ENST00000611481 NUDCD2Q8WVJ2 157 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 GLMPQ8WWB7 406 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 VPS50Q96JG6 964 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 OR2A14Q96R47 310 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 HEMGNQ9BXL5 484 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 NUAK2Q9H093 628 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 ESRP2Q9H6T0 727 aaKnown RBP3.96□□□□□ -1.78
LINC00540-201ENST00000611481 DDIT4Q9NX09 232 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 CHCHD3Q9NX63 227 aaKnown RBP3.96□□□□□ -1.78
LINC00540-201ENST00000611481 MSRB1Q9NZV6 116 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 DHCR7Q9UBM7 475 aaKnown RBP3.96□□□□□ -1.78
LINC00540-201ENST00000611481 FETUBQ9UGM5 382 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 HPCAL4Q9UM19 191 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 EXO1Q9UQ84 846 aaKnown RBP3.96□□□□□ -1.78
LINC00540-201ENST00000611481 AURKCQ9UQB9 309 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 KCNK7Q9Y2U2 307 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 WBP11Q9Y2W2 641 aaKnown RBP3.96□□□□□ -1.78
LINC00540-201ENST00000611481 ANGPTL3Q9Y5C1 460 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 LIPGQ9Y5X9 500 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 ALG6Q9Y672 507 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 NFS1Q9Y697 457 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 CADP27708 2225 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 TMEM272A0A1B0GTI8 110 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 OR52A4PA6NMU1 304 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 PDZK1P1A8MUH7 402 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 A8MVJ9 347 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 USP17L23D6RBM5 183 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 SLC33A1O00400 549 aaPredicted RBP3.95□□□□□ -1.78
LINC00540-201ENST00000611481 UBFD1O14562 309 aaKnown RBP3.95□□□□□ -1.78
LINC00540-201ENST00000611481 MAPK13O15264 365 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 CEP104O60308 925 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 PEX11AO75192 247 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 SLC25A12O75746 678 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 TMCC1O94876 653 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 HPP00738 406 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 ATP1A1P05023 1023 aaKnown RBP3.95□□□□□ -1.78
LINC00540-201ENST00000611481 GPR1P46091 355 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 ARFIP1P53367 373 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 SNU13P55769 128 aaKnown RBP3.95□□□□□ -1.78
LINC00540-201ENST00000611481 P2RX3P56373 397 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 ZNF33BQ06732 778 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 MTA1Q13330 715 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 RUNX2Q13950 521 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 SQLEQ14534 574 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 RPS6KA1Q15418 735 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 OASLQ15646 514 aaKnown RBP3.95□□□□□ -1.78
LINC00540-201ENST00000611481 HFEQ30201 348 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 NKAIN1Q4KMZ8 207 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 GPRC6AQ5T6X5 926 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 BRAT1Q6PJG6 821 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 LRRC31Q6UY01 552 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 PLEKHM3Q6ZWE6 761 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 RUFY3Q7L099 469 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 DPPA4Q7L190 304 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 PHLDB2Q86SQ0 1253 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 NR2C2APQ86WQ0 139 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 RFLNBQ8N5W9 214 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 HCAR2Q8TDS4 363 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 RNASE6Q93091 150 aaKnown RBP3.95□□□□□ -1.78
LINC00540-201ENST00000611481 MED30Q96HR3 178 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 CELF6Q96J87 481 aaKnown RBP3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 108.8 ms