RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 CORO7P57737 925 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 EEFSECP57772 596 aaKnown RBP13.28□□□□□ -0.28
UPF1-211ENST00000600868 DUSP5Q16690 384 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 DEFB109BQ30KR1 87 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 SPATS1Q496A3 300 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 CYP27C1Q4G0S4 372 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 NET1Q7Z628 596 aaPredicted RBP13.28□□□□□ -0.28
UPF1-211ENST00000600868 SERPINA11Q86U17 422 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 CALHM3Q86XJ0 350 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 APLFQ8IW19 511 aaPredicted RBP13.28□□□□□ -0.28
UPF1-211ENST00000600868 SLC44A2Q8IWA5 706 aaPredicted RBP13.28□□□□□ -0.28
UPF1-211ENST00000600868 ARHGAP24Q8N264 748 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 C10orf111Q8N326 155 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 GALNT16Q8N428 558 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 SLC5A8Q8N695 610 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 OR5D16Q8NGK9 328 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 OR10A6Q8NH74 314 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 GPR151Q8TDV0 419 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 XAGE5Q8WWM1 108 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 PSMF1Q92530 271 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 THOC3Q96J01 351 aaKnown RBP13.28□□□□□ -0.28
UPF1-211ENST00000600868 ECSITQ9BQ95 431 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 BTBD2Q9BX70 525 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 NXF5Q9H1B4 397 aaKnown RBP13.28□□□□□ -0.28
UPF1-211ENST00000600868 TMEM38AQ9H6F2 299 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 Q9N2J8 555 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 EXD2Q9NVH0 621 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 MYOTQ9UBF9 498 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 PRPF19Q9UMS4 504 aaKnown RBP13.28□□□□□ -0.28
UPF1-211ENST00000600868 RRP9O43818 475 aaKnown RBP13.27□□□□□ -0.29
UPF1-211ENST00000600868 DNAJA2O60884 412 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 AK1P00568 194 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 ITGA3P26006 1051 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 ITPKBP27987 946 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 TRHRP34981 398 aaPredicted RBP13.27□□□□□ -0.29
UPF1-211ENST00000600868 NR0B1P51843 470 aaKnown RBP13.27□□□□□ -0.29
UPF1-211ENST00000600868 DSTNP60981 165 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 NCALDP61601 193 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 FOXK2Q01167 660 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 ADRM1Q16186 407 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 PIGGQ5H8A4 983 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 SAMD4BQ5PRF9 694 aaKnown RBP13.27□□□□□ -0.29
UPF1-211ENST00000600868 GCNT6Q5T4J0 391 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 ATAD3BQ5T9A4 648 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 IRAK1BP1Q5VVH5 260 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 HEPHL1Q6MZM0 1159 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 TCTN3Q6NUS6 607 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 BNC2Q6ZN30 1099 aaPredicted RBP13.27□□□□□ -0.29
UPF1-211ENST00000600868 RPS19BP1Q86WX3 136 aaKnown RBP13.27□□□□□ -0.29
UPF1-211ENST00000600868 TAGAPQ8N103 731 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 SLC15A4Q8N697 577 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 COX18Q8N8Q8 333 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 CHDHQ8NE62 594 aaPredicted RBP13.27□□□□□ -0.29
UPF1-211ENST00000600868 FBXO30Q8TB52 745 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 BRIX1Q8TDN6 353 aaKnown RBP13.27□□□□□ -0.29
UPF1-211ENST00000600868 THAP3Q8WTV1 239 aaPredicted RBP13.27□□□□□ -0.29
UPF1-211ENST00000600868 SNRNP27Q8WVK2 155 aaKnown RBP13.27□□□□□ -0.29
UPF1-211ENST00000600868 CDS1Q92903 461 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 RAB8BQ92930 207 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 ZNF583Q96ND8 569 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 CDRT15Q96T59 188 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 LRMDAQ9H2I8 198 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 A4GALTQ9NPC4 353 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 ADA2Q9NZK5 511 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 CBLCQ9ULV8 474 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 LIPT1Q9Y234 373 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 KCNMB2Q9Y691 235 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 KCNE3Q9Y6H6 103 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 IGF2RP11717 2491 aa13.27□□□□□ -0.29
UPF1-211ENST00000600868 GXYLT2A0PJZ3 443 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 A8MUI8 341 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 A8MVJ9 347 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 FAM220BPB1ANY3 271 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 WWP2O00308 870 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 CDK2AP1O14519 115 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 NUDT7P0C024 238 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 ARAFP10398 606 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 PIGAP37287 484 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 NRG3P56975 720 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 MLF1P58340 268 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 POU6F2P78424 691 aaPredicted RBP13.26□□□□□ -0.29
UPF1-211ENST00000600868 LIPEQ05469 1076 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 RBBP4Q09028 425 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 CYP51A1Q16850 503 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 ARHGAP11BQ3KRB8 267 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 SLC34A3Q8N130 599 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 METTL25Q8N6Q8 603 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 OR4N2Q8NGD1 307 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 FAM110BQ8TC76 370 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 SLC22A8Q8TCC7 542 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 PIK3R3Q92569 461 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 OTUB1Q96FW1 271 aaPredicted RBP13.26□□□□□ -0.29
UPF1-211ENST00000600868 REXO5Q96IC2 774 aaKnown RBP13.26□□□□□ -0.29
UPF1-211ENST00000600868 ZNF354BQ96LW1 612 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 TRNT1Q96Q11 434 aaKnown RBP13.26□□□□□ -0.29
UPF1-211ENST00000600868 CDCP1Q9H5V8 836 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 LIN28AQ9H9Z2 209 aaKnown RBP13.26□□□□□ -0.29
UPF1-211ENST00000600868 CPNE5Q9HCH3 593 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 P2RX2Q9UBL9 471 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 CD300AQ9UGN4 299 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms