RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 TMEM237Q96Q45 408 aa15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 TMUB1Q9BVT8 246 aa15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 RBM24Q9BX46 236 aaKnown RBP15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 FBXL2Q9UKC9 423 aa15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 GPR55Q9Y2T6 319 aaPredicted RBP15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 TIMM22Q9Y584 194 aa15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 CLCA1A8K7I4 914 aa15.98■□□□□ 0.15
SHKBP1-223ENST00000600552 DLX3O60479 287 aa15.98■□□□□ 0.15
SHKBP1-223ENST00000600552 RHOXF2BP0C7M4 288 aa15.98■□□□□ 0.15
SHKBP1-223ENST00000600552 RAE1P78406 368 aaKnown RBP15.98■□□□□ 0.15
SHKBP1-223ENST00000600552 ACSM2AQ08AH3 577 aa15.98■□□□□ 0.15
SHKBP1-223ENST00000600552 KEAP1Q14145 624 aa15.98■□□□□ 0.15
SHKBP1-223ENST00000600552 DAZAP2Q15038 168 aaPredicted RBP15.98■□□□□ 0.15
SHKBP1-223ENST00000600552 FBXL19-AS1Q494R0 122 aa15.98■□□□□ 0.15
SHKBP1-223ENST00000600552 ZNF628Q5EBL2 1059 aa15.98■□□□□ 0.15
SHKBP1-223ENST00000600552 SPDYAQ5MJ70 313 aa15.98■□□□□ 0.15
SHKBP1-223ENST00000600552 ZNF678Q5SXM1 525 aa15.98■□□□□ 0.15
SHKBP1-223ENST00000600552 ACSM2BQ68CK6 577 aa15.98■□□□□ 0.15
SHKBP1-223ENST00000600552 PLCZ1Q86YW0 608 aa15.98■□□□□ 0.15
SHKBP1-223ENST00000600552 SLC44A2Q8IWA5 706 aaPredicted RBP15.98■□□□□ 0.15
SHKBP1-223ENST00000600552 ZPLD1Q8TCW7 415 aa15.98■□□□□ 0.15
SHKBP1-223ENST00000600552 C16orf78Q8WTQ4 265 aa15.98■□□□□ 0.15
SHKBP1-223ENST00000600552 EFHD2Q96C19 240 aaPredicted RBP15.98■□□□□ 0.15
SHKBP1-223ENST00000600552 CTHRC1Q96CG8 243 aa15.98■□□□□ 0.15
SHKBP1-223ENST00000600552 APIPQ96GX9 242 aa15.98■□□□□ 0.15
SHKBP1-223ENST00000600552 SFXN2Q96NB2 322 aa15.98■□□□□ 0.15
SHKBP1-223ENST00000600552 BBS4Q96RK4 519 aa15.98■□□□□ 0.15
SHKBP1-223ENST00000600552 KCNA7Q96RP8 456 aa15.98■□□□□ 0.15
SHKBP1-223ENST00000600552 MCM8Q9UJA3 840 aa15.98■□□□□ 0.15
SHKBP1-223ENST00000600552 ZNF180Q9UJW8 692 aa15.98■□□□□ 0.15
SHKBP1-223ENST00000600552 OR10H1Q9Y4A9 318 aa15.98■□□□□ 0.15
SHKBP1-223ENST00000600552 C17orf51A8MQB3 221 aa15.97■□□□□ 0.15
SHKBP1-223ENST00000600552 CTAGE8P0CG41 777 aa15.97■□□□□ 0.15
SHKBP1-223ENST00000600552 ZNF155Q12901 538 aaPredicted RBP15.97■□□□□ 0.15
SHKBP1-223ENST00000600552 FOXD4Q12950 439 aaPredicted RBP15.97■□□□□ 0.15
SHKBP1-223ENST00000600552 CSTF3Q12996 717 aaKnown RBP15.97■□□□□ 0.15
SHKBP1-223ENST00000600552 SNTA1Q13424 505 aa15.97■□□□□ 0.15
SHKBP1-223ENST00000600552 P4HA3Q7Z4N8 544 aa15.97■□□□□ 0.15
SHKBP1-223ENST00000600552 GRAMD2AQ8IUY3 354 aa15.97■□□□□ 0.15
SHKBP1-223ENST00000600552 CTAGE4Q8IX94 777 aa15.97■□□□□ 0.15
SHKBP1-223ENST00000600552 UBQLNLQ8IYU4 475 aa15.97■□□□□ 0.15
SHKBP1-223ENST00000600552 CCNYL1Q8N7R7 359 aa15.97■□□□□ 0.15
SHKBP1-223ENST00000600552 MNS1Q8NEH6 495 aa15.97■□□□□ 0.15
SHKBP1-223ENST00000600552 OR4K17Q8NGC6 315 aa15.97■□□□□ 0.15
SHKBP1-223ENST00000600552 OR4N2Q8NGD1 307 aa15.97■□□□□ 0.15
SHKBP1-223ENST00000600552 MTBPQ96DY7 904 aa15.97■□□□□ 0.15
SHKBP1-223ENST00000600552 TM9SF2Q99805 663 aa15.97■□□□□ 0.15
SHKBP1-223ENST00000600552 C1QTNF3Q9BXJ4 246 aa15.97■□□□□ 0.15
SHKBP1-223ENST00000600552 ACPTQ9BZG2 426 aa15.97■□□□□ 0.15
SHKBP1-223ENST00000600552 OR2B2Q9GZK3 357 aa15.97■□□□□ 0.15
SHKBP1-223ENST00000600552 FOLH1BQ9HBA9 442 aa15.97■□□□□ 0.15
SHKBP1-223ENST00000600552 NFU1Q9UMS0 254 aa15.97■□□□□ 0.15
SHKBP1-223ENST00000600552 MED12LQ86YW9 2145 aa15.97■□□□□ 0.15
SHKBP1-223ENST00000600552 ACANP16112 2415 aa15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 ZFHX3Q15911 3703 aa15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 FAM221AA4D161 298 aa15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 OR6C70A6NIJ9 312 aa15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 SCO2O43819 266 aa15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 BCAS2O75934 225 aaPredicted RBP15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 HSD3B1P14060 373 aa15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 DRD2P14416 443 aa15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 CPN1P15169 458 aa15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 ATP5F1P24539 256 aaPredicted RBP15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 HSD3B2P26439 372 aa15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 ECHS1P30084 290 aa15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 CPOXP36551 454 aa15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 RFX3P48380 749 aa15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 C2orf80Q0P641 193 aa15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 STX5Q13190 355 aa15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 EFR3AQ14156 821 aa15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 NPSR1Q6W5P4 371 aa15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 CHMP1BQ7LBR1 199 aa15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 NTNG2Q96CW9 530 aa15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 ZNF382Q96SR6 550 aa15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 CXXC4Q9H2H0 198 aa15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 GSX1Q9H4S2 264 aaPredicted RBP15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 SLC35C2Q9NQQ7 365 aa15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 GALNT8Q9NY28 637 aa15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 FETUBQ9UGM5 382 aa15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 WIF1Q9Y5W5 379 aa15.96■□□□□ 0.15
SHKBP1-223ENST00000600552 HRNRQ86YZ3 2850 aaPredicted RBP15.96■□□□□ 0.14
SHKBP1-223ENST00000600552 PLOD2O00469 737 aa15.95■□□□□ 0.14
SHKBP1-223ENST00000600552 CASKO14936 926 aa15.95■□□□□ 0.14
SHKBP1-223ENST00000600552 TO15178 435 aa15.95■□□□□ 0.14
SHKBP1-223ENST00000600552 SMNDC1O75940 238 aaKnown RBP eCLIP15.95■□□□□ 0.14
SHKBP1-223ENST00000600552 IL18BPO95998 194 aa15.95■□□□□ 0.14
SHKBP1-223ENST00000600552 RAF1P04049 648 aa15.95■□□□□ 0.14
SHKBP1-223ENST00000600552 JUNP05412 331 aaKnown RBP15.95■□□□□ 0.14
SHKBP1-223ENST00000600552 ANXA4P09525 319 aaPredicted RBP15.95■□□□□ 0.14
SHKBP1-223ENST00000600552 CT45A8P0DMV1 189 aa15.95■□□□□ 0.14
SHKBP1-223ENST00000600552 CT45A9P0DMV2 189 aa15.95■□□□□ 0.14
SHKBP1-223ENST00000600552 IMPDH1P20839 514 aa15.95■□□□□ 0.14
SHKBP1-223ENST00000600552 GRK2P25098 689 aa15.95■□□□□ 0.14
SHKBP1-223ENST00000600552 DPP4P27487 766 aa15.95■□□□□ 0.14
SHKBP1-223ENST00000600552 SRD5A2P31213 254 aa15.95■□□□□ 0.14
SHKBP1-223ENST00000600552 TIA1P31483 386 aaKnown RBP eCLIP15.95■□□□□ 0.14
SHKBP1-223ENST00000600552 LHX2P50458 406 aa15.95■□□□□ 0.14
SHKBP1-223ENST00000600552 HEPACAMQ14CZ8 416 aa15.95■□□□□ 0.14
SHKBP1-223ENST00000600552 SPIN4Q56A73 249 aa15.95■□□□□ 0.14
SHKBP1-223ENST00000600552 CT45A2Q5DJT8 189 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms