RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 TUBGCP3Q96CW5 907 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 PGM2Q96G03 612 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 TMEM41AQ96HV5 264 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 AMDHD1Q96NU7 426 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 ZIM3Q96PE6 472 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 BTBD9Q96Q07 612 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 PHF12Q96QT6 1004 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 OSBPL11Q9BXB4 747 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 GLIPR2Q9H4G4 154 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 ZNF703Q9H7S9 590 aaPredicted RBP12.97□□□□□ -0.33
LIG1-218ENST00000599322 FOLH1BQ9HBA9 442 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 Q9N2J8 555 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 SDHAF3Q9NRP4 125 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 C19orf53Q9UNZ5 99 aaPredicted RBP12.97□□□□□ -0.33
LIG1-218ENST00000599322 MAPRE3Q9UPY8 281 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 DTX4Q9Y2E6 619 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 CCL27Q9Y4X3 112 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 MYO7BQ6PIF6 2116 aa12.97□□□□□ -0.33
LIG1-218ENST00000599322 C15orf38-AP3S2A0A0A6YYH1 394 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 PRAMEF25A6NGN4 478 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 GNB5O14775 395 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 LSM1O15116 133 aaKnown RBP12.96□□□□□ -0.33
LIG1-218ENST00000599322 HNRNPRO43390 633 aaKnown RBP12.96□□□□□ -0.33
LIG1-218ENST00000599322 TRIM3O75382 744 aaPredicted RBP12.96□□□□□ -0.33
LIG1-218ENST00000599322 IFI6P09912 130 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 CREB1P16220 341 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 SDC1P18827 310 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 ACVR2AP27037 513 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 HTR1EP28566 365 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 PTGER4P35408 488 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 MC3RP41968 323 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 PNLIPRP2P54317 469 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 CHI3L2Q15782 390 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 DECR1Q16698 335 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 CYP27C1Q4G0S4 372 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 TIGD3Q6B0B8 471 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 TMEM81Q6P7N7 255 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 ANGPTL8Q6UXH0 198 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 LARP4Q71RC2 724 aaKnown RBP eCLIP12.96□□□□□ -0.33
LIG1-218ENST00000599322 OR7G2Q8NG99 324 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 OR5M9Q8NGP3 310 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 NEIL3Q8TAT5 605 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 ELP4Q96EB1 424 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 ZNF764Q96H86 408 aaPredicted RBP12.96□□□□□ -0.33
LIG1-218ENST00000599322 EGLN2Q96KS0 407 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 VSTM2LQ96N03 204 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 ADOQ96SZ5 270 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 HHATLQ9HCP6 504 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.96□□□□□ -0.33
LIG1-218ENST00000599322 PTGDR2Q9Y5Y4 395 aa12.96□□□□□ -0.33
LIG1-218ENST00000599322 TMEM233B4DJY2 109 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 ZNHIT1O43257 154 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 TBX19O60806 448 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 ICOSLGO75144 302 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 SKAP2O75563 359 aaPredicted RBP12.95□□□□□ -0.34
LIG1-218ENST00000599322 CBR3O75828 277 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 KCNH1O95259 989 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 BCKDHAP12694 445 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 TACR1P25103 407 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 ETV4P43268 484 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 TRPC1P48995 793 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 PRKAG1P54619 331 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 ABCE1P61221 599 aaKnown RBP12.95□□□□□ -0.34
LIG1-218ENST00000599322 PRR5P85299 388 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 ADORA2A-AS1P86434 159 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 HSPB3Q12988 150 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 STX3Q13277 289 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 B3GNT6Q6ZMB0 384 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 FGD2Q7Z6J4 655 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 CHERPQ8IWX8 916 aaKnown RBP12.95□□□□□ -0.34
LIG1-218ENST00000599322 TRIM42Q8IWZ5 723 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 PM20D2Q8IYS1 436 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 OR2T11Q8NH01 316 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 SLC35A4Q96G79 324 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 PKNOX2Q96KN3 472 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 FCRL1Q96LA6 429 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 GNRHR2Q96P88 292 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 TUBB1Q9H4B7 451 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 PNPLA3Q9NST1 481 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 ACSS1Q9NUB1 689 aaPredicted RBP12.95□□□□□ -0.34
LIG1-218ENST00000599322 NKIRAS1Q9NYS0 192 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 BAIAP2L1Q9UHR4 511 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 ZDHHC2Q9UIJ5 367 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 C15orf41Q9Y2V0 281 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 RAP2CQ9Y3L5 183 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 PCDHGB3Q9Y5G1 929 aa12.95□□□□□ -0.34
LIG1-218ENST00000599322 LRRC3CA6NJW4 275 aa12.94□□□□□ -0.34
LIG1-218ENST00000599322 UGT2B11O75310 529 aa12.94□□□□□ -0.34
LIG1-218ENST00000599322 CELA3AP09093 270 aa12.94□□□□□ -0.34
LIG1-218ENST00000599322 RFPL3SP0C7P2 107 aa12.94□□□□□ -0.34
LIG1-218ENST00000599322 CT45A8P0DMV1 189 aa12.94□□□□□ -0.34
LIG1-218ENST00000599322 CT45A9P0DMV2 189 aa12.94□□□□□ -0.34
LIG1-218ENST00000599322 COX6B1P14854 86 aa12.94□□□□□ -0.34
LIG1-218ENST00000599322 PRPS1L1P21108 318 aa12.94□□□□□ -0.34
LIG1-218ENST00000599322 CHRNB4P30926 498 aa12.94□□□□□ -0.34
LIG1-218ENST00000599322 SLC1A6P48664 564 aa12.94□□□□□ -0.34
LIG1-218ENST00000599322 CDK9P50750 372 aaKnown RBP12.94□□□□□ -0.34
LIG1-218ENST00000599322 CORO7P57737 925 aa12.94□□□□□ -0.34
LIG1-218ENST00000599322 PMPCAQ10713 525 aa12.94□□□□□ -0.34
LIG1-218ENST00000599322 DUSP8Q13202 625 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms