RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 OR5AK3PQ8NH89 298 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 PIK3R3Q92569 461 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 NR4A3Q92570 626 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 INPP5KQ9BT40 448 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 SERHL2Q9H4I8 314 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 CCDC134Q9H6E4 229 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 FGFR1OP2Q9NVK5 253 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 GPATCH2Q9NW75 528 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 FBXO34Q9NWN3 711 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 TUBA8Q9NY65 449 aaPredicted RBP13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 FLRT3Q9NZU0 649 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 KLF13Q9Y2Y9 288 aaPredicted RBP13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 SNX8Q9Y5X2 465 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 C2orf72A6NCS6 295 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 C17orf51A8MQB3 221 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 POLR3GO15318 223 aaPredicted RBP13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 CFLARO15519 480 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 REM1O75628 298 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 SLC22A3O75751 556 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 NKX2-2O95096 273 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 HMGN2P05204 90 aaKnown RBP13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 RFPL3SP0C7P2 107 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 NAGAP17050 411 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 GNLYP22749 145 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 GABRA3P34903 492 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 CASP3P42574 277 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 CDKN2CP42773 168 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 MAN2A2P49641 1150 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 CLNS1AP54105 237 aaKnown RBP13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 NRG3P56975 720 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 PLCXD2Q0VAA5 305 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 RPS6KA2Q15349 733 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 INAQ16352 499 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 DUSP5Q16690 384 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 FNDC7Q5VTL7 733 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 FAM180AQ6UWF9 173 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 ZAR1Q86SH2 424 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 FBXW8Q8N3Y1 598 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 NATD1Q8N6N6 113 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 BCORP1Q8N888 145 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 DNAJB8Q8NHS0 232 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 EFHD2Q96C19 240 aaPredicted RBP13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 SLC35A4Q96G79 324 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 ZNF317Q96PQ6 595 aaPredicted RBP13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 ADOQ96SZ5 270 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 C3orf14Q9HBI5 128 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 SLC52A3Q9NQ40 469 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 SERHLQ9NQF3 203 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 SLC6A13Q9NSD5 602 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 SACM1LQ9NTJ5 587 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 ZCCHC3Q9NUD5 404 aaKnown RBP13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 OLAHQ9NV23 265 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 ZIM2Q9NZV7 527 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 MAPRE3Q9UPY8 281 aa13.04□□□□□ -0.32
SHKBP1-217ENST00000598558 LRRC3CA6NJW4 275 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 B4DXG7 233 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 NPIPA5E9PKD4 350 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 KLRC4-KLRK1H3BQV0 150 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 TRIM3O75382 744 aaPredicted RBP13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 GLSO94925 669 aaPredicted RBP13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 P04436 131 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 PGRP06401 933 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 CYP4B1P13584 511 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 DDX5P17844 614 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 MRPL19P49406 292 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 CASP9P55211 416 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 RPS26P62854 115 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 LASP1Q14847 261 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 NUP54Q7Z3B4 507 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 SZRD1Q7Z422 152 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 C6orf120Q7Z4R8 191 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 FGD2Q7Z6J4 655 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 GALNT10Q86SR1 603 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 CHERPQ8IWX8 916 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 GALNT11Q8NCW6 608 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 OR52N2Q8NGI0 321 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 OR4A15Q8NGL6 344 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 FAM110BQ8TC76 370 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 RNF138Q8WVD3 245 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 SLC9A6Q92581 669 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 DIO2Q92813 273 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 VPS33AQ96AX1 596 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 CCDC115Q96NT0 180 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 MS4A4EQ96PG1 132 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 FAM173AQ9BQD7 235 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 ANGPTL4Q9BY76 406 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 RTN4RQ9BZR6 473 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 ZNF385DQ9H6B1 395 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 CNIH4Q9P003 139 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 CBLCQ9ULV8 474 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 NPIPA1Q9UND3 350 aa13.03□□□□□ -0.32
SHKBP1-217ENST00000598558 A0A0G2JND7 137 aa13.02□□□□□ -0.33
SHKBP1-217ENST00000598558 ANKRD33BA6NCL7 494 aa13.02□□□□□ -0.33
SHKBP1-217ENST00000598558 OR6C70A6NIJ9 312 aa13.02□□□□□ -0.33
SHKBP1-217ENST00000598558 FAM166BA8MTA8 275 aa13.02□□□□□ -0.33
SHKBP1-217ENST00000598558 HS6ST1O60243 411 aa13.02□□□□□ -0.33
SHKBP1-217ENST00000598558 WISP1O95388 367 aa13.02□□□□□ -0.33
SHKBP1-217ENST00000598558 CRYABP02511 175 aaKnown RBP13.02□□□□□ -0.33
SHKBP1-217ENST00000598558 GSNP06396 782 aa13.02□□□□□ -0.33
SHKBP1-217ENST00000598558 VIMP08670 466 aaKnown RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms